BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0036.p (608 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 1041 0.0 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 167 2e-42 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 166 6e-42 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 146 6e-36 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 142 9e-35 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/595 (86%), Positives = 546/595 (91%), Gaps = 1/595 (0%) Query: 1 LPAPWRAEAQAQLAPEEKIVAWLELDLDATLKFSRGMIVATDRRLLAKDNDNEGWTAWEY 60 LP W+ E A+LA E ++AWLELDLDA L+F+R +++ATDRRLLA + W W Y Sbjct: 13 LPERWQTEIAARLAAGETVLAWLELDLDAQLQFNRSLVLATDRRLLASPPAGQAWQEWAY 72 Query: 61 RVGLALKHHDHAGVGSLELQDGQSRLAFWRYTLAQNPQALRLINQFDQQRDARTSGQAAM 120 R L LKHHDHAGVG+LEL DG RLA WRYTL+QNPQALRLI F+QQRD SG A Sbjct: 73 RPDLQLKHHDHAGVGTLELCDGAGRLAAWRYTLSQNPQALRLIKLFEQQRDLLASGVQA- 131 Query: 121 EEELDVCPQCKAPIPQGQETCAICPEAKEAPPSTWALFRLTRFAKPYKGSLLLGFLLTLA 180 EEE DVCP CKA +P+GQETCAICPE KEAPPSTWALFRL+RFAKPYKGSLLLGFLLTLA Sbjct: 132 EEEGDVCPNCKAVLPEGQETCAICPETKEAPPSTWALFRLSRFAKPYKGSLLLGFLLTLA 191 Query: 181 STAATLVPPYMTMPLMDNVLIPFQNGAPLDSHLAGLYLSGLLGSAMVAWILGWGRTYILA 240 STAATLVPPYMTMPLMDNVLIPFQNGAP+D+HLA LYLSGLLG+A++AW LGW RTYILA Sbjct: 192 STAATLVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILA 251 Query: 241 LVSERIGADLRTTTYEHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFIIDV 300 LVSERIGADLRTTTY HLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDF IDV Sbjct: 252 LVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDV 311 Query: 301 LMIIMTAVILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADT 360 LMIIMTA ILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADT Sbjct: 312 LMIIMTAAILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADT 371 Query: 361 IPGIRVVKAFAQEKREAARFKEANRHNLVVNDRVNKIWSLFTPTVTMLTEIGLLVVWVFG 420 IPGIRVVKAFAQEKRE ARF+EANRHNL+VNDRVNKIWSLFTPTVT LTE+GLLVVWVFG Sbjct: 372 IPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFG 431 Query: 421 IWQVSHNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPE 480 IWQVS NQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPE Sbjct: 432 IWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPE 491 Query: 481 PANPVHIEKVKGAIELRNVGFRYGNRSVMRGVDLSIAPGEMIGLVGHSGSGKSTMVNLIC 540 PANPVH+EKV+GAIE+RN+GFRYGNR+V+R + LSIAPGEMIGLVGHSGSGKSTMVNLIC Sbjct: 492 PANPVHLEKVQGAIEVRNIGFRYGNRAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLIC 551 Query: 541 RFYDVSEGSIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEAT 595 RFYDVSEG+IRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEAT Sbjct: 552 RFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEAT 606 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 144/477 (30%), Positives = 237/477 (49%), Gaps = 33/477 (6%) Query: 141 CAICPEAKEAPPSTWALFRLTRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVL 200 A P A+++ + AL L F PYK LL L + + AATL PY ++D Sbjct: 22 AADSPTARKS--ALAALRGLLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQMID--- 76 Query: 201 IPF-QNGAPLDSHLAGLYLSGLLGSAMVAWILGWGRTYILALVSERIGADLRTTTYEHLL 259 + F G+ SH+ LY L G A + + R Y+++ + ER+ ADLR+ Y H++ Sbjct: 77 LGFGAAGSKSASHI-NLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVV 135 Query: 260 RLSQEYFGGKRTGDLMARIGSETDRICVFLSLHL-------LDFIIDVLMIIMTAVILIS 312 S E+F +TG++++R+ ++T I + + L FI + M+ T+ L S Sbjct: 136 TQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTS 195 Query: 313 INPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQ 372 I + +LP+ F + +L + DR+ ++ + + + + + V+AF Sbjct: 196 IIIVMLAAVVLPIVFYGRRVR----KLSRASQ--DRV-ADASAMAGEILNAMPTVQAFTH 248 Query: 373 EKREAARFKEA-NRHNLVVNDRVNKIWSLFTPTVTMLTEIGLLVVWVFGIWQVSHNQITV 431 E+ EA RF ++ R +RV + SL T +L ++ V G V ++ Sbjct: 249 EEIEARRFAQSVERAFGTAMERV-RARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSG 307 Query: 432 GVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSV-----PEPANPVH 486 G L F+ Y S L ++S ++ TQ+AA +R+ D+L S V PE P Sbjct: 308 GELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRT 367 Query: 487 IEKVKGAIELRNVGFRYGNRS---VMRGVDLSIAPGEMIGLVGHSGSGKSTMVNLICRFY 543 A+ ++ V F Y +R + + L++ PGE + +VG SG+GK+T+ L+ RFY Sbjct: 368 ANG--AALTVQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFY 425 Query: 544 DVSEGSIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATRAEII 600 D +G I +DGVDIR L + R IG+V Q+ +F ENI +G+PEA+ AE+I Sbjct: 426 DPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVI 482 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 166 bits (419), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 224/456 (49%), Gaps = 23/456 (5%) Query: 154 TWALFRLTRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPLDSHL 213 +W + + ++ K LL+ +L L L+ P +MD VL+ N A + ++ Sbjct: 150 SWFIPAVVKYRKTLAEVLLISLVLQLIG----LITPMFFQVVMDKVLV---NHAMMTLNV 202 Query: 214 AGLYLSGLLGSAMVAWILGWGRTYILALVSERIGADLRTTTYEHLLRLSQEYFGGKRTGD 273 + GL+ + + +L RT I A S +I +L + + HLL L YF +R GD Sbjct: 203 IAV---GLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGD 259 Query: 274 LMARIGSETDRICVFLSLHLLDFIIDVLMIIMTAVILISINPWLALVTLLPLPFIAWMIH 333 +AR+ E + I FL+ + + ++D++ + +++ + L+L+ L +P + Sbjct: 260 SIARV-RELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSL 318 Query: 334 V----VRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREAARFKEANRHNLV 389 V +R+RL F K +E + L +T+ G+ VKA A E R ++ + + Sbjct: 319 VFTPLLRERLNDKFNK----SAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVA 374 Query: 390 VNDRVNKIWSLFTPTVTMLTEIGLLVVWVFGIWQVSHNQITVGVLTAFLAYISRFYTRLD 449 I L + V +++++ + + G V N+++VG L AF + + + Sbjct: 375 AGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPIL 434 Query: 450 SMSRIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHIEKVKGAIELRNVGFRYGNRS-- 507 ++++ + Q+ R+ D+LD + V N + +V GAI V FRY + Sbjct: 435 RLAQLWNDFQQIGISMSRLADVLDARTEVA--GNRTRLPRVNGAISFDLVSFRYRPETPE 492 Query: 508 VMRGVDLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGSIRIDGVDIRSLPISEYRR 567 V+RG+ L I PGE+IG+VG SGSGKST+ L+ R Y G I +DG DI + + R+ Sbjct: 493 VIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQ 552 Query: 568 NIGLVLQEPFLFFGTIAENIAYGKPEATRAEIIAGA 603 IG+VLQE LF +I +NIA P +II A Sbjct: 553 QIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAA 588 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 180/377 (47%), Gaps = 8/377 (2%) Query: 235 RTYILALVSERIGADLRTTTYEHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLL 294 R + A V++R + + HL LS + ++TG + I T + +S L Sbjct: 102 RELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLF 161 Query: 295 DFIIDVLMIIMTAVILIS-INPWLALVTLLPLP-FIAWMIHVV--RDRLRHGFEKIDRIW 350 + ++ I + LI+ + W +++T L +I + I V R R ++D Sbjct: 162 SILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELD--- 218 Query: 351 SEVTNVLADTIPGIRVVKAFAQEKREAARFKEANRHNLVVNDRVNKIWSLFTPTVTMLTE 410 S D++ VK F E+ EA R+ E + + SL + + Sbjct: 219 SHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIA 278 Query: 411 IGLLVVWVFGIWQVSHNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFD 470 I + ++ V +T+G + A++ + Y L+ + + +++ A +R+F Sbjct: 279 IAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFS 338 Query: 471 ILDHVSSVPEPANPVHIEKVKGAIELRNVGFRYG-NRSVMRGVDLSIAPGEMIGLVGHSG 529 +L+ V + A+ ++ + +V F Y NR ++ VD ++ G +VGHSG Sbjct: 339 LLEEHREVADSADAKPLKTQGANLHFDHVDFSYERNRQILFDVDFTVQAGTTTAVVGHSG 398 Query: 530 SGKSTMVNLICRFYDVSEGSIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAY 589 SGKST+ L+ RFYDV G+IRIDG D+R++ + R+ IG+V Q+ LF TI NIAY Sbjct: 399 SGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAY 458 Query: 590 GKPEATRAEIIAGAGRA 606 GKP ATR +I+A A A Sbjct: 459 GKPGATREQIVAAAKAA 475 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 142 bits (357), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 120/440 (27%), Positives = 206/440 (46%), Gaps = 22/440 (5%) Query: 159 RLTRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPLDSHLAGLYL 218 RL PYK L + F+ + + A V PY+ L+D + G P S L+L Sbjct: 8 RLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFV----GKPAFS----LWL 59 Query: 219 S--GLLGSAMVAWILGWGRTYILALVSERIGADLRTTTYEHLLRLSQEYFGGKRTGDLMA 276 ++G + I + +Y++ VS RI +LR + +L L ++ G ++ Sbjct: 60 VPVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVIN 119 Query: 277 RIGSETDRICVFLSLHLLDFIIDVLMIIMTAVILISINPWLALVTLLPLPFIAWMIHVVR 336 + E +I ++ + L ++ L+ +N L +VTL+ LP + ++ Sbjct: 120 SMMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTG 179 Query: 337 DRLRHGFEKIDR----IWSEVTNVLADTIPGIRVVKAFAQEKREAARFKEANRHNLVVND 392 RL+ K++R + +E+T V+ +T +V+K F + E RF + Sbjct: 180 KRLK----KLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTM 235 Query: 393 RVNKIWSLFTPTVTMLTEIGLLVVWVFGIWQVSHNQITVGVLTAFLAYISRFYTRLDSMS 452 R+ +S P ++T + VV V + Q + QITVG +F+ + T L ++ Sbjct: 236 RMTAAFSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLA 295 Query: 453 RIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHIEKVKGAIELRNVGFRY-GNRSV-MR 510 I Q+ A A+ ++ ++D + + G ++ VGF Y G+ + ++ Sbjct: 296 EINGPLQRGMAAAEEVYKLIDKTTE--RITGEALAGRATGQLDFVEVGFAYPGHEQLALK 353 Query: 511 GVDLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGSIRIDGVDIRSLPISEYRRNIG 570 ++L + GE I VG SG GKST+V+LI FY S G IR+DG DI ++ + R+ I Sbjct: 354 NINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIA 413 Query: 571 LVLQEPFLFFGTIAENIAYG 590 +V Q LF T+A NIAYG Sbjct: 414 MVNQNTVLFDDTLAANIAYG 433 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,783,868 Number of extensions: 70629 Number of successful extensions: 414 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 411 Number of HSP's successfully gapped: 44 Length of query: 608 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 517 Effective length of database: 1,188,985 Effective search space: 614705245 Effective search space used: 614705245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)