BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0031.p
         (850 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311491|ref|YP_003775583.1| PII uridylyltransferase [Herbas...  1516   0.0  

>gi|300311491|ref|YP_003775583.1| PII uridylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score = 1516 bits (3924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/850 (84%), Positives = 780/850 (91%)

Query: 1   MPSLAVILKKQLKASRQEAIEAFQADGKTDHLLTQLRRNVDAALTEAWNKCDLPRDIALV 60
           MP+LA+ LKKQLKA+RQ+AIE FQ++ KT+ LL QLRR VD ALT+AW    +  + ALV
Sbjct: 1   MPTLAITLKKQLKAARQQAIEVFQSNHKTEQLLAQLRRTVDEALTQAWEALGMSGNAALV 60

Query: 61  AVGGYGRGELFPHSDVDVLILLDETPGKAMQEKLESLVQLFWDIGLEIGHSIRTIDECMS 120
           AVGGYGRGELFPHSDVDVLILLD+ P    +EKLESLVQLFWDIGLEIGHSIRTIDEC+ 
Sbjct: 61  AVGGYGRGELFPHSDVDVLILLDKAPDAGKKEKLESLVQLFWDIGLEIGHSIRTIDECLD 120

Query: 121 ESAADITVQTSLLEARLVTGNKTLFQLLQVKCQAAMDPRAFFLAKTLELRQRHVKYEDTP 180
           ESAADITVQTSLLEARLVTG++ LF+ LQ + QAA+DP AFF AKTLE+RQRHVKYEDTP
Sbjct: 121 ESAADITVQTSLLEARLVTGSRALFKQLQERYQAALDPLAFFQAKTLEMRQRHVKYEDTP 180

Query: 181 YSLEPNCKESPGGLRDLQVILWVAKAAGLGDSWSKLAQRGLLTATEARQLTQKERAFKDI 240
           YSLEPNCKESPGGLRDLQVILWVAKAAGLG SWS+LA+ G+LT+TEARQL QKERAFKDI
Sbjct: 181 YSLEPNCKESPGGLRDLQVILWVAKAAGLGHSWSELAEHGMLTSTEARQLRQKERAFKDI 240

Query: 241 RIRLHIYTNRREDRLVFDIQTPIAESFGFKSTDTRRASEYLMQRYYWAAKAVTQLNTILL 300
           RIRLHI T+RREDRLVFDIQT IAE+FGFK+TDTRRASEYLMQRYYWAAKAVTQLNTILL
Sbjct: 241 RIRLHILTDRREDRLVFDIQTQIAETFGFKTTDTRRASEYLMQRYYWAAKAVTQLNTILL 300

Query: 301 QNIEAQLFPQDVIPQKINERFNELNGFLDIAHDNVFEDTPSAMLEVFLVLAQHQELKDMS 360
           QNIEA LFPQ  +P++INERFNE+NGF+DIAHD+VFE+TPSAMLEVFLVL+QH ELKDMS
Sbjct: 301 QNIEAHLFPQQAVPRQINERFNEVNGFVDIAHDHVFEETPSAMLEVFLVLSQHAELKDMS 360

Query: 361 ARTMRALWHARFKIDNAFRADPVNHALFMQILQGKRGIMHALRGMNQTSVLGRYLPNFRR 420
           ARTMRALWHARFKIDNAFR +P NH LFMQILQ KRGI HALR MN TSVLGRYLPNFR+
Sbjct: 361 ARTMRALWHARFKIDNAFRNNPENHRLFMQILQSKRGITHALRRMNATSVLGRYLPNFRQ 420

Query: 421 IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANFAQPWILYVAALF 480
           IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANFAQPW+LYVAALF
Sbjct: 421 IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANFAQPWVLYVAALF 480

Query: 481 HDIAKGRGGDHSKLGMADARQFCVQHGISEANTELVVFLVEHHLSMSQVAQKQDLSDPDV 540
           HDIAKGRGGDHSKLGMADAR FCVQHGIS  NT+L+VFLVE HL+MS VAQKQD+SDPDV
Sbjct: 481 HDIAKGRGGDHSKLGMADARAFCVQHGISPENTDLIVFLVEQHLAMSHVAQKQDMSDPDV 540

Query: 541 IQQFADSVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGEAPSAD 600
           I  FA  VKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGE PSAD
Sbjct: 541 ITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGEEPSAD 600

Query: 601 RELKNTQQEAIKTLRLYGLPADAHENFWRQLDVAYFLRLDASDIAWQTRSFYDKMDSKVP 660
           RELKNTQQEAIKTLRLYGLPADAHE  W+QLDVAYFLR DASDIAWQTR F+DK+D+ VP
Sbjct: 601 RELKNTQQEAIKTLRLYGLPADAHEQLWKQLDVAYFLRHDASDIAWQTRCFFDKVDTAVP 660

Query: 661 LVKCRLAPIGEGVQVAVYTPDQPDLFARICSYFDEKNFSILDAKIHTTKTNYALDAFLIS 720
           LV+CRLAPIGEGVQVAVYTPD+ DLFARICSYFDEK+FSI DAKIHTT+ NYALDAFLI+
Sbjct: 661 LVRCRLAPIGEGVQVAVYTPDRQDLFARICSYFDEKSFSIFDAKIHTTRNNYALDAFLIN 720

Query: 721 APVFAKNYRDIINLIEHELAHLLQSDSPLPTPAKGRLSRLSRTFPINPSVDLRPDERGQY 780
           APVFAKNYRDIINLIEHEL  LLQS+ PLP P+K RLSRLSRTFP+NP+VDLRPDERGQY
Sbjct: 721 APVFAKNYRDIINLIEHELGALLQSEEPLPAPSKARLSRLSRTFPVNPAVDLRPDERGQY 780

Query: 781 YLLSVSANDRNGLLYTISNILAKYKINLHTAKVMTLGERVEDVFLVDGAALNHPRNQIML 840
           YLLS+SANDR GLLY+ISN+LAKYKINLHTAKVMTLGERVEDVFL+DG  L+ PRNQI+L
Sbjct: 781 YLLSISANDRAGLLYSISNVLAKYKINLHTAKVMTLGERVEDVFLIDGPGLSQPRNQILL 840

Query: 841 ETDLLKALRI 850
           ETDLLK LRI
Sbjct: 841 ETDLLKTLRI 850


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,514,523
Number of extensions: 102316
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 1
Length of query: 850
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 757
Effective length of database: 1,179,515
Effective search space: 892892855
Effective search space used: 892892855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)