BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0027.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311494|ref|YP_003775586.1| elongation factor TS [Herbaspir...   495   e-141

>gi|300311494|ref|YP_003775586.1| elongation factor TS
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  495 bits (1274), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/280 (85%), Positives = 264/280 (94%), Gaps = 1/280 (0%)

Query: 1   MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60
           MAAITAA+VG+LRAKTDAPMMECKKALTEA+GDM +AEEILRVKLGSKASKASSRIT+EG
Sbjct: 1   MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60

Query: 61  VVATYIAGGIGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADLAALAALPLGD-K 119
           V++TYIAG +GALVE+NCETDFVTKNDEFI L  A AK++ E+NPAD+AAL A  L D K
Sbjct: 61  VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120

Query: 120 TVEETRTELIGRIGENMSIRRFQRFETTGKLVSYLHGTRIGVVVEFDGADEQVGKDVAMH 179
           T+EE RTELIGRIGENMS RRFQRFET+ KL SYLHGTRIGV+VEFDGADEQVGKDVAMH
Sbjct: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQVGKDVAMH 180

Query: 180 IAAMKPVALSSDQVPADLIEKERSVASLKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 239
           IAAMKPVALS++QVPADLIEKERSVA+LKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ
Sbjct: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 240

Query: 240 SFVKNDKQTVEQMLKAANTSVKSFSMFVVGEGIEKKQDDF 279
           +FVKNDKQ+VEQMLKAAN++VKSF+M+VVGEGIEKKQDDF
Sbjct: 241 AFVKNDKQSVEQMLKAANSTVKSFAMYVVGEGIEKKQDDF 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,438
Number of extensions: 24608
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)