BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0020.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine ...   348   6e-97
gi|300311774|ref|YP_003775866.1| two component sensor histidine ...   165   8e-42

>gi|300311910|ref|YP_003776002.1| transmembrane sensor histidine
           kinase transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 443

 Score =  348 bits (892), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 228/444 (51%), Positives = 292/444 (65%), Gaps = 29/444 (6%)

Query: 11  SQHQLLLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGLTWLRMRL 70
           +QH LL RLFW+R      + L++A A   + ++LP+  L  ++GL    NG TWLR+R 
Sbjct: 16  TQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRW 75

Query: 71  PQPVREPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAYAFGLALY 130
            +P  + ELF QL +D++ L+ALLYF+GG+TNPFVSFYLPALA  AA L   YA  LAL 
Sbjct: 76  TRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALC 135

Query: 131 SLACYSALTYLYQPLHIHDHDQATAYHLAGMWVNFVMSAALITWFVTRMSATVRSRDAQL 190
           +L  YS L Y+Y+PLHIHD  QA AYHLAGMW+NF +SA LITWFV+R++A VRSR+ +L
Sbjct: 136 ALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETEL 195

Query: 191 AQAREQQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGRNNALTMYRDDLAV 250
           A+ARE+QLQ +RI+ALGTQAA AAH ++TPL+TVAVIAGELR +     AL  Y ++L V
Sbjct: 196 ARARERQLQSQRILALGTQAAGAAHALNTPLSTVAVIAGELRRDMATQPALAAYDEELRV 255

Query: 251 VEEQIAVCKTALD--RMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISIRLTLPQ 308
           VEEQIAVCK AL+  R   D Q R  D+ AP+  + WL   ++ WRLRHPA+ +   + Q
Sbjct: 256 VEEQIAVCKAALESMRQDADAQTRNEDS-API--TPWLTTLLEGWRLRHPAVLLSAEVHQ 312

Query: 309 GAPDLLDMAPARDQQLIGQIVQTLLDNAAQAVAE---NGKVDVVLSLKKDTVASAVMNSA 365
                     AR + L  QI+ TLLDNAA AV E    G+V + +    +        +A
Sbjct: 313 PG-----WVAARLEDL-SQILLTLLDNAAHAVRERGSEGRVSIRMRAADEPAGRPAQKAA 366

Query: 366 IIRVADDGPGIAPELLKRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTLAAAAGTSAG 425
           II +AD+G GIAPELL+RLG  PV SS+GG GIGLMLAFA+A  +GGKL L +       
Sbjct: 367 IIEIADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAFASAAHLGGKLRLYS------- 419

Query: 426 TSSGTAAGTAGRGACATLVLPLIA 449
                   T G+G CA L LPL A
Sbjct: 420 --------TPGQGTCAELRLPLSA 435


>gi|300311774|ref|YP_003775866.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score =  165 bits (417), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 218/444 (49%), Gaps = 42/444 (9%)

Query: 13  HQLLLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGLTWLRMRLPQ 72
           HQ +L L  +R +  L Q   +A  +    L LPL  +  VL  ++AFN  + LR    +
Sbjct: 30  HQNMLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLVAFNIASHLRWHERR 89

Query: 73  PVREPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAYAFGLALYSL 132
                ELF  L +DV+ L+  LY +GG TNPF   YL  + ++A +L    ++ +   ++
Sbjct: 90  IATNAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVGVTM 149

Query: 133 ACYSALTYLYQPLHI-HDHDQA-TAYHLAGMWVNFVMSAALITWFVTRMSATVRSRDAQL 190
            C + L    +PL +  DH+    + ++ G  + F+++A L+ +F+TR+S+ +R+ DA L
Sbjct: 150 LCLAGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDALL 209

Query: 191 AQAREQQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGRNNALTMYRDDLAV 250
           A  R++  +++ IV +G  A+ AAHE+ TPLATV+VI G+ +     +    M  DD+A 
Sbjct: 210 ADLRQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRQDML-DDIAE 268

Query: 251 VEEQIAVCKTALDRMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISIRLTLPQGA 310
           +E Q+  CK+ +  + +     + ++     L+ +L    + WR   P            
Sbjct: 269 MEAQLQRCKSIVSGVLLSAGQARGESSIKTTLNTFLDSVAEDWRKSRP------------ 316

Query: 311 PDLLDMAPARDQQLIGQIVQTLLDNAAQAVAENGKVDVVLSLKKDTVASAVMNSA---II 367
                +A    Q LIGQ +    D+A + +  N  +D    +    ++  V       ++
Sbjct: 317 -----VAVFDYQNLIGQDLPVAFDSAIKQMLGN-VLDNAFEVSPHWLSLEVRREGGLLLM 370

Query: 368 RVADDGPGIAPELLKRLGYEPVRSSTG--GKGIGLMLAFATARQMGGKLTLAAAAGTSAG 425
            V+D GPG    ++ ++G +P +S+ G  G+G+GL      AR++GG++           
Sbjct: 371 EVSDQGPGFPEWMINQIG-KPYQSTKGKPGRGLGLFFVVNVARKLGGRV----------- 418

Query: 426 TSSGTAAGTAGRGACATLVLPLIA 449
                A+   G GA  TL LPL A
Sbjct: 419 ----WASNLPGAGARVTLELPLSA 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,188,290
Number of extensions: 45174
Number of successful extensions: 340
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 4
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)