BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0019.p (180 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311909|ref|YP_003776001.1| response regulator consisting o... 284 3e-78 gi|300311773|ref|YP_003775865.1| two component response regulato... 132 1e-32 gi|300309981|ref|YP_003774073.1| two component response regulato... 68 4e-13 gi|300313791|ref|YP_003777883.1| response regulator protein [Her... 59 2e-10 gi|300313680|ref|YP_003777772.1| two component response regulato... 57 9e-10 >gi|300311909|ref|YP_003776001.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Herbaspirillum seropedicae SmR1] Length = 182 Score = 284 bits (727), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 143/182 (78%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 1 MSAAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDS 60 MSAAFLILDDNDVFA TLARSL+RRGF A VAHSGE AL+AA F YATIDLQL++DS Sbjct: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 Query: 61 GLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSALEHSAND 120 GLQW++PLR+ LPHARLLVLTGYASIATTVQAIK+GADNYLAKPAN+DSILSAL HS N Sbjct: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGNG 120 Query: 121 ASADLD--HTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKRPV 178 A + A+PLS+ERLEWEHIQRVL E++GNISSTARALNMHRRTLQRKLAKRPV Sbjct: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 Query: 179 AK 180 A+ Sbjct: 181 AR 182 >gi|300311773|ref|YP_003775865.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 104/175 (59%), Gaps = 5/175 (2%) Query: 5 FLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQD-SGLQ 63 LI++D+ FA TL RS RRG++ ++A S E+A + YA +DL+L + SGL Sbjct: 7 LLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGGNASGLA 66 Query: 64 WIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSALEHSANDASA 123 + L ++VLTG+ASI T V+AIK GA YLAKP+N D I +A H A + Sbjct: 67 CVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGVSEV 126 Query: 124 DLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKRPV 178 +L A S++ LEWE I VLV+ NIS TAR L MHRRTL RKL K+ V Sbjct: 127 EL----PARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRV 177 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%) Query: 5 FLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDSGLQW 64 L+ +D+ V A L RSL G++A +G +A A +T DF +DL L + SGL+ Sbjct: 3 ILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEV 62 Query: 65 IAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKP---ANLDSILSAL-EHSAND 120 + LR + +L+LT S+ VQ + GAD+Y+AKP + L++ + AL A Sbjct: 63 LRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGG 122 Query: 121 ASADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQR 171 + H PLS ++ + R+ + + +AR L + LQR Sbjct: 123 GPTVIRH----GPLS-----YDQVGRIAYIGEQMLELSARELGLLEVLLQR 164 >gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Query: 1 MSAAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDS 60 M ++DD+++ + L R L+ G++A S ++ L+A +D+++ Sbjct: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 Query: 61 GLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSALEHSAND 120 G + + L + ++ ++GY +I TTVQA+KAGA +L KP + +L A+E + Sbjct: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 Query: 121 ASADLD-HTDAAAPLSVERLE 140 A L T+ AA S RLE Sbjct: 121 AERQLQSRTEHAACTS--RLE 139 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 57.0 bits (136), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 56/105 (53%) Query: 6 LILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDSGLQWI 65 L+++D+ + + + L + GF+ G+ A A T D+A +DL L Q GL + Sbjct: 4 LLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGLAVL 63 Query: 66 APLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSI 110 LRE+ +L+ T ++A V + AGAD+YL KP +L+ + Sbjct: 64 RTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEEL 108 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.127 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 521,555 Number of extensions: 19736 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 9 Length of query: 180 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 101 Effective length of database: 1,245,805 Effective search space: 125826305 Effective search space used: 125826305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)