BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0016.p (490 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 112 6e-26 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 93 6e-20 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 88 2e-18 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 87 3e-18 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 81 2e-16 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 123/459 (26%), Positives = 197/459 (42%), Gaps = 38/459 (8%) Query: 43 IDPATRFKNYNANDGVYEQT-VEWFRSIVEYRLSDQTSFKNTFYHYDALRDYRNVEVYRY 101 +DP T + NA D + Q+ V + +R +D+ SF+N +YD + N Sbjct: 265 VDPGTTYGARNARDADFVQSRVASTTATFTHRFNDEFSFRNGLRYYDYHLNRNNTNGGTV 324 Query: 102 NAANTQVVRSSAFLQRHDQELTGNRFEWQHRGRLGALESEWAGGVDYSVNRMTRFPRTVA 161 N A + A L R D+ N+ E + +LG++ E G++ + ++ + Sbjct: 325 NEATATTTLNHAKLVR-DENGWFNQSELTQKLQLGSIRHEILYGLE--LGSQSKDASQAS 381 Query: 162 GPVSSVNPLNFSTEAFFSIPGMTSDFVPDRSNRVT-------TIAAFLENRTRLLPSLAL 214 G V NF + F+ D P+R N T T A +L++ L Sbjct: 382 GVV------NFPGVSIFNPVLPVVD--PNRLNPPTLTYGTYDTFATYLQDSLSLSEQWKA 433 Query: 215 VTGLRHDRIELE--VENQRTASVTDPAYFKSTYRPTTARAGLVWDITPSANLFVQYSTAA 272 + GLR+DR + + N S D + T + RAGLVW + + + ++ +S + Sbjct: 434 LVGLRYDRYRQQSRILNLANGSTAD---LQRTDTAVSPRAGLVWQPSLTQSYYLSWSRSF 490 Query: 273 DPPAGVLTTANFSQVRNFDLTTGD--QVEAGSKFDFWDGRGNATISAYAITRKNLAVTDS 330 P A N DL EAG+K+DFW+GR +AT+S + + R N+ S Sbjct: 491 QPSGESFALA----TNNADLAPEQTRNTEAGAKYDFWEGRASATVSVFRLERDNI---KS 543 Query: 331 TNPN-VTVPVGQQSSRGVELAFGVRPVKNLRLQGNLSLVRAQYDNFTESVGGVAVSRAGN 389 PN V +PVG+Q + G EL+F + +L + + A + GV G Sbjct: 544 ALPNGVVIPVGKQRTDGAELSFSADLKQGWKLLAGYAWLNAVITESSSFDNGVPFK--GK 601 Query: 390 RPTNTPARVANLWLDYAFLPDWNAGIDARAVSSVYGNTANTVSAPGYAIFGASLSRKLNK 449 T TP NLWL G A AV + + N NTV+ PGY A + + +K Sbjct: 602 NATLTPRHSGNLWLTRELGEGLVVGGGANAVGARFANPGNTVTLPGYVTVDAMAAYRTSK 661 Query: 450 ATVTARVKNL--TDKVYADNITSTPMFYLGAPRTFEVAV 486 V + NL T + + + T+ + GAPR + + Sbjct: 662 YEVQLNIGNLFNTGYIISGHGTNPNLSMPGAPRNVALTL 700 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 120/485 (24%), Positives = 184/485 (37%), Gaps = 60/485 (12%) Query: 21 QEHVDRPYWGTPLLNPTTGTGRIDPATRFKNYNANDGVYEQTVEWFRSIVEYRLSDQTSF 80 Q + D+P +G P LN G R Y N Q V F V+++++ + Sbjct: 253 QHNQDQPDYGLPPLN-----GHPANVGRDTAYGLNSDRTIQDVASFNVGVKHKIAPDVTL 307 Query: 81 KN----TFYHYDALRDYRNVEVYRYNAANTQVVRSSAFL---------QRHDQELTG--- 124 +N + H DA+ N A TQ+V +S+ L Q HD+ +T Sbjct: 308 RNQTQFNYVHTDAVETAPNTIGTVSGAGFTQLVNASSNLPLSSLFVRGQSHDRVITDYSI 367 Query: 125 -NRFEWQHRGRLGALESEWAGGVDYSVNRM--TRFPRTVAGPVSSVNPLNFSTEAFFSIP 181 N+ E + G+++ + GV+ + + R + +++N +T +P Sbjct: 368 FNQTELTAKFATGSIKHDAVVGVEVGHDGYDNQNYYRNGSCNGTALNANGATTGYVDCVP 427 Query: 182 GM-------TSDFVPDRSNRV----TTIAAFLENRTRLLPSLALVTGLRHDRIELEVENQ 230 + S NR T+AA++ + L+P LV GLR+DR + N Sbjct: 428 LLNPSYSAAGSSVSSSTGNRAGGSANTVAAYVGDTVELVPQFKLVGGLRYDRYIASITNS 487 Query: 231 RTASVTDPAYFKSTYRPTTARAGLVWDITPSANLFVQYSTAADPPAGVLTTANFSQVRNF 290 AS PA T + R+G +W T + +V Y T+ +P LT Q N Sbjct: 488 -IASARTPAAASQTINFLSLRSGAIWQPTSAQAYYVSYGTSFNPSLEQLTGTQGQQ--NL 544 Query: 291 DLTTGDQVEAGSKFDFWDGRGNATISAYAITRKNLAVTDSTNPNVTVPVGQQSSRGVELA 350 D E G K+D DG T +A+ IT+ N Q + GV Sbjct: 545 DPEKNRSYELGGKWDLADGLA-LTAAAFQITKDNAR--------------SQVATGVYAL 589 Query: 351 FGVRPVKNLRLQGNLSLVR-----AQYDNFTESV--GGVAVSRAGNRPTNTPARVANLWL 403 G V R + R A Y V G + G P NTP W Sbjct: 590 AGKVRVNGARAGATGHITREWQVAANYTYLGAKVLEGAAGDNSVGKVPVNTPKHTLTTWT 649 Query: 404 DYAFLPDWNAGIDARAVSSVYGNTANTVSAPGYAIFGASLSRKLNKATVTARVKNLTDKV 463 Y P W G A +S Y + NTV GY + A L+ + + NL++K+ Sbjct: 650 TYDLAPHWQIGGGASYMSQRYADAPNTVQVGGYTRYDAMLAYTTKAYDIRLNLYNLSNKM 709 Query: 464 YADNI 468 Y D + Sbjct: 710 YYDAL 714 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/437 (23%), Positives = 181/437 (41%), Gaps = 39/437 (8%) Query: 66 FRSIVEYRLSDQTSFKNTFYHYDALRDYRNV---EVYRYNAANTQVVRSSAFLQRHDQEL 122 RS + LS + ++ D ++ N + Y+ + V+ + + Q Q Sbjct: 308 LRSTLTRALSQDWTLRHALALMDLNSNFDNTFVTQAYQSAPLDLDRVQRTRYQQNLQQRS 367 Query: 123 TGNRFEWQHRGRLGALESEWAGGVDYSVNRMTRFPR--TVAGP-VSSVNPLNFSTEAFFS 179 N E G+LGA + GV++S + R PR +VA P VS+V P N + Sbjct: 368 VQNNLELL--GQLGA--HDLLLGVEHSWQK--REPRLWSVAAPAVSAVTPENTRNGDDPT 421 Query: 180 IPGMTSDFVPDRSNRVTTIAAFLENRTRLLPSLALVTGLRHDRIELEVENQRTASVTDPA 239 P + ++ + + +++++ L ++ GLR DR E++ N+R ++ Sbjct: 422 TPFQMN------YHKASNLGLYVQDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRSE-- 473 Query: 240 YFKSTYRPTTARAGLVWDITPSANLFVQYSTAADPPAGVLTTANFSQVRNF-DLTT--GD 296 T + R G+VW+ P + ++ +S P G + NF DL Sbjct: 474 ---RTAHALSPRIGVVWEALPGQHAYLSWSKNFAPVGGDVIGITPDARGNFNDLKPQFSR 530 Query: 297 QVEAGSKFDFWDGRGNATISAYAITRKNLAVTDSTNPNVTVPVGQQSSRGVELAFGVRPV 356 QVEAG K ++ D R + T++ + + N V D P G + +RG+EL+ Sbjct: 531 QVEAGIKSEWLDRRLSTTLAWFQLELFNRNVADPVRPGFFEQSGLERNRGIELS------ 584 Query: 357 KNLRLQGNLS---LVRAQYDNFTESVGGVAVSRAGNRPTNTPARVANLWLDYAFLPDWNA 413 ++G L+ VRA + + + G R + R +L+L YA W A Sbjct: 585 ----VEGELAAPWFVRAGWAIQSAKIVQAEPKFVGKRASGVSGRGGSLFLSYAPTLGWFA 640 Query: 414 GIDARAVSSVYGNTANTVSAPGYAIFGASLSRKLNKATVTARVKNLTDKVYADNITSTPM 473 + + Y + N + P Y + + +L++A T V NL ++ Y ++ T Sbjct: 641 ELGLTVEGARYADRDNLLELPAYTRWDGKMGYRLDEAEFTLAVTNLANRRYYESATGLSQ 700 Query: 474 FYLGAPRTFEVAVLANF 490 GAPR + F Sbjct: 701 VRPGAPRALLLTAAYKF 717 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 146/341 (42%), Gaps = 31/341 (9%) Query: 39 GTGRIDPATRFKNYNANDGVYEQTVEWFRSIVEYRLSDQTSFKNTFYHYDALRDYRNVEV 98 G + P +RF NDG + + +E RL++ + +H + D + E Sbjct: 269 GNAGVLPVSRFLG-EPNDGDIKMQNQNHLLTLEQRLNENWHLRTGIFHKEGSLDGYSTEA 327 Query: 99 YRYNAANTQVVRSSAF--LQRHDQEL---TGNRFEWQHRGR--LGALESEWAGGVDYSVN 151 + A N + R + HD L G +F G L E +W +D Sbjct: 328 FALQADNATLRRQRRYRDYSWHDTSLQAEIGGKFATAGVGHEVLVGTEVDWLT-LD---Q 383 Query: 152 RMTRFPRTVAGP--VSSVNPLNFSTEAFFSIPGMTSDFVPDRSNRVTTIAAFLENRTRLL 209 RM R + P V+ NP+ + P T++ D S R + +L+++ L Sbjct: 384 RMLRINPSNVAPYAVNIYNPVYGQAQ-----PTPTAN--TDTSERQISTGLYLQDQLSLS 436 Query: 210 PSLALVTGLRHDRIELEVENQRTASVTDPAYFKSTYRPTTARAGLVWDITPSANLFVQYS 269 L+ G+R D + N R +VT K Y P R GL + +TPS +++V S Sbjct: 437 ERWRLLAGVRADAFRSTLNNLRNGAVTRQD--KHAYSP---RLGLTYLLTPSWSVYVSAS 491 Query: 270 TAADPPAGVLTTANFSQVRNFDLTTGDQVEAGSKFDFWDGRGNATISAYAITRKNLAVTD 329 + P +G + N F T EAG KF D R AT++ + IT++N+ TD Sbjct: 492 KSFRPNSGSDVSGNA-----FSPETSRAAEAGLKFQSEDKRSGATLAVFDITKQNVLTTD 546 Query: 330 STNPNVTVPVGQQSSRGVELAFGVRPVKNLRLQGNLSLVRA 370 NPN ++ G+ S+GVEL R + R+ GNL+ A Sbjct: 547 PANPNFSIAAGEVRSKGVELDANARLGHHWRVTGNLAYTDA 587 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/372 (27%), Positives = 159/372 (42%), Gaps = 36/372 (9%) Query: 119 DQELTGNRFEWQHRGRLGALESEWAGGVDYS--VNRMTRFPRTVAGPVSSVNPLNFSTEA 176 D L N+ E R + GA E G+D+S +R R+ R A ++ NP+ T Sbjct: 352 DNTLVDNQLE--GRLKWGATEHTVLFGLDWSRMYDREVRY-RGAAPSLNIDNPVYGVT-- 406 Query: 177 FFSIPGMTSDFVPDRSNRVTTIAAFLENRTRLLPSLALVTGLRHDRIELEVEN--QRTAS 234 IP T+ F N + + +++ + L L G R D+++ E N RT + Sbjct: 407 ---IPAATTLFGNLEEN-MNQTGLYAQDQIKFDQRLTLTLGGRWDKVKDETRNYFNRTTT 462 Query: 235 VTDPAYFKSTYRPTTARAGLVWDITPSANLFVQYSTAADPPAGVLTTANFSQVRNFDLTT 294 +D + + R GL + +T +V Y+T+ P G ++F+ + FD T Sbjct: 463 RSDDSAL-------SGRIGLSYLVTRDIAPYVSYATSFLPQTG----SDFNG-KPFDPTK 510 Query: 295 GDQVEAGSKFDFWDGRGNATISAYAITRKNLAVTDSTNPNVTVPVGQQSSRGVELAFGVR 354 Q E G K+ DG+ T + + +T+ N+ D + N V G+ SRG+EL Sbjct: 511 ARQAEVGIKYQPADGKTLFTAALFELTKTNVQTPDPAHTNFNVLSGEIKSRGLELEAKGE 570 Query: 355 PVKNLRLQGNLSLVRAQYDNFTESVGGVAVSRAGNRPTNTPARVANLWLDYAF----LPD 410 VK L L + + Y + + A S G +P P + A++W DY L Sbjct: 571 IVKGLNLSASYT-----YTDVKNTQNNTA-SLLGKQPILVPRQAASVWADYTVQGGPLAG 624 Query: 411 WNAGIDARAVSSVYGNTANTVSAPGYAIFGASLSRKLNKATVTARVKNLTDKVYADNITS 470 G AR S Y + ANTV G +F A LN+ + N+T+K Y + Sbjct: 625 AGIGGGARYTGSNYADAANTVKNGGVTVFDAVFHYNLNRWRYALNISNITNKEYTSCLAE 684 Query: 471 -TPMFYLGAPRT 481 T + A RT Sbjct: 685 PTTTCFWAAERT 696 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,461,464 Number of extensions: 57906 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 12 Length of query: 490 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 401 Effective length of database: 1,198,455 Effective search space: 480580455 Effective search space used: 480580455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)