BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0014.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspiril...   464   e-132
gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspiril...   102   4e-23

>gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 259

 Score =  464 bits (1194), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/257 (86%), Positives = 239/257 (92%), Gaps = 1/257 (0%)

Query: 1   MYIDSHCHINFPELVARLPDILGKMDENRVSHALCVSVNLPEFPQVLALAEQYPHIYASV 60
           MYIDSHCHINFP+L ARLP+I GKM EN+VSHALCVSV+LP+FPQVLALAEQYPH+YASV
Sbjct: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPHVYASV 60

Query: 61  GVHPDYEDTPEPSVEQLVELADNPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRIT 120
           GVHPDYEDTPEPSV++LV LAD+PRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASR T
Sbjct: 61  GVHPDYEDTPEPSVDELVRLADHPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRAT 120

Query: 121 GKPLIIHTRSASEDTIRIMREEGANPEAGGAAGVMHCFTESQEVADAAIELGFYISFSGI 180
           GKPLIIHTR+ASEDTIRI+REEGA+P+AGGAAGVMHCFTESQEVADAAIELGFYISFSGI
Sbjct: 121 GKPLIIHTRAASEDTIRILREEGASPQAGGAAGVMHCFTESQEVADAAIELGFYISFSGI 180

Query: 181 VTFKSAKALQEVARTIPLERMLIETDSPYLAPVPYRGKTNEPGLVRHVAEFIADLRGIPV 240
           VTFKSAK LQ+VAR IPLERMLIETDSPYLAPVP+RGKTNEPG VRHV EFIADLRG   
Sbjct: 181 VTFKSAKDLQQVARAIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRGTSA 240

Query: 241 X-WARHTTENFFTLFKM 256
              AR T+ENFF LF +
Sbjct: 241 AEVARQTSENFFKLFGI 257


>gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 122/248 (49%), Gaps = 15/248 (6%)

Query: 1   MYIDSHCHINFPELVARLPDILGKMDENRVSHALCVSVNLPEFPQVLALAEQYPHIYASV 60
           M++D+HCH++  E   R   +  +  +  V   +  ++    F +V  LA +  +   ++
Sbjct: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60

Query: 61  GVHPDYEDTPEPSVEQLVELA-----DNPRIVAIGETGLDYYRLQGDLEWQRER----FR 111
           G+HP Y  + + S   L+  A     D+P  V IGE GLD++         RE+    F 
Sbjct: 61  GIHPLYVPSSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120

Query: 112 THIRASRITGKPLIIHTRSASEDTIRIMREEGANPEAGGAAGVMHCFTESQEVADAAIEL 171
             ++ +R    P+++H R + +  ++ +R            G+ H F  S + A   +EL
Sbjct: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRV------PGGIAHAFNGSDQQARTFVEL 174

Query: 172 GFYISFSGIVTFKSAKALQEVARTIPLERMLIETDSPYLAPVPYRGKTNEPGLVRHVAEF 231
           G ++ F G +TF  A  ++ +A  +PL  +++ETD+P +AP     + N P  +  + + 
Sbjct: 175 GLHLGFGGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQV 234

Query: 232 IADLRGIP 239
           +A+LRG+P
Sbjct: 235 LAELRGLP 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,003
Number of extensions: 28969
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)