BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0012.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase [Herbas...   714   0.0  
gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate dehydro...   244   1e-65

>gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/379 (91%), Positives = 366/379 (96%), Gaps = 2/379 (0%)

Query: 1   MPVITCVEDLRVLAKKRVPKAFYDYADSGSYTESTYRANTDDLAALKLRQRVAINVDQRS 60
           MPV+TCVED R+LAKKRVPKAFYDYADSGSYTESTYRAN+ DLAALKLRQRVAINVD+RS
Sbjct: 1   MPVMTCVEDFRLLAKKRVPKAFYDYADSGSYTESTYRANSKDLAALKLRQRVAINVDERS 60

Query: 61  TRTTMIGHDVAMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASV 120
           TRTTMIGHDV MPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASV
Sbjct: 61  TRTTMIGHDVTMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASV 120

Query: 121 TTKPFWFQLYVMRDRGFVKSMIDRAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLT 180
           TTKPFWFQLYVMRDRGFVKS+I+RAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLT
Sbjct: 121 TTKPFWFQLYVMRDRGFVKSLIERAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLT 180

Query: 181 LDTLMDLASKPAWALRALTGRKTFGNLAGHITG--GGSGIQTLSQWTASQFDPTLNWDDV 238
           L+TL+DLASKP WALRAL GRKTFGNLAGHI G  G  G+QTLS+WTASQFDPTLNWDDV
Sbjct: 181 LETLLDLASKPGWALRALGGRKTFGNLAGHIKGGEGAGGVQTLSKWTASQFDPTLNWDDV 240

Query: 239 AWIKEQWGGKLILKGILDVEDAKLAAQTGADALVVSNHGGRQLDGAMSSIEALPAIAEAV 298
           AWIK+QWGGKLILKGILDVEDAKLA Q+GADA+VVSNHGGRQLDGAMSSIEALPAIA+AV
Sbjct: 241 AWIKQQWGGKLILKGILDVEDAKLAVQSGADAIVVSNHGGRQLDGAMSSIEALPAIAQAV 300

Query: 299 GDQIEVWFDGGIRSGQDILKATALGAKGTMIGRAFLYSLGAMGGEGVTKMLQILHKELDV 358
           GDQIEVWFDGGIRSGQD+LKA ALGA+GTMIGRAFLYSLGAMGGEGV++ML+I+ KELDV
Sbjct: 301 GDQIEVWFDGGIRSGQDVLKAVALGARGTMIGRAFLYSLGAMGGEGVSQMLEIMRKELDV 360

Query: 359 SMALTGTKDIKDVGPQILI 377
           SMALTGTKDIKDVGPQILI
Sbjct: 361 SMALTGTKDIKDVGPQILI 379


>gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  244 bits (622), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 206/375 (54%), Gaps = 4/375 (1%)

Query: 7   VEDLRVLAKKRVPKAFYDYADSGSYTESTYRANTDDLAALKLRQRVAINVDQRSTRTTMI 66
           +E+LR +A+KRVP   ++Y + G+  E + R N +    +    R  ++V  R     + 
Sbjct: 37  IEELRAMARKRVPNFCFEYVEGGAEEEISLRHNREVFTRIGFLPRTLVDVSVRRQGRRLF 96

Query: 67  GHDVAMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASVTTKPFW 126
           G D+A P  I PTG +G+    G++  A AA   G+PF L+ +S  S+E+V   +    W
Sbjct: 97  GQDIASPFLIGPTGFSGLLAREGDVAMASAAASAGVPFVLTNVSTTSLEEVVRRSGAQVW 156

Query: 127 FQLYVMRDRGFVKSMIDRAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLTLDTLMD 186
            Q+Y+ RDR FV S+  RA+AA    LVLT D  + G+R  D +N  S P +L     +D
Sbjct: 157 QQVYLYRDRAFVASVAQRAQAAGIGVLVLTTDSAVYGKREWDARN-FSSPRRLDWRNKLD 215

Query: 187 LASKPAWALRALT--GRKTFGNLAGHITGGGSGIQTLSQWTASQ-FDPTLNWDDVAWIKE 243
           +   P W +  L   G   F NL   +    + ++  +     Q     L+W DV W++ 
Sbjct: 216 VLRHPRWLIDILYPHGFPRFANLGDLLPPDQTSVRGAAAAILGQSLSAALDWADVQWLRG 275

Query: 244 QWGGKLILKGILDVEDAKLAAQTGADALVVSNHGGRQLDGAMSSIEALPAIAEAVGDQIE 303
            W GKL+LKG++ VEDA+ A   G D +V+SNHGGRQLDGA+S+++ LP +  AV  Q+ 
Sbjct: 276 IWPGKLVLKGVMQVEDAQRAVALGVDGIVLSNHGGRQLDGALSTMDVLPEVVAAVKGQLT 335

Query: 304 VWFDGGIRSGQDILKATALGAKGTMIGRAFLYSLGAMGGEGVTKMLQILHKELDVSMALT 363
           V  DGG R G DI+KA ALGA   ++GRA  Y L A G  G T+ L+IL  E+D  +AL 
Sbjct: 336 VMLDGGFRRGADIVKAIALGADAVLLGRATTYGLAAGGQAGATRALEILRSEVDRVLALL 395

Query: 364 GTKDIKDVGPQILIR 378
              DI  +    L R
Sbjct: 396 ACPDIDQLDASYLRR 410


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,213,965
Number of extensions: 52175
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)