BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0011.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase...   555   e-159

>gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase;
           carotene 7,8-desaturase [Herbaspirillum seropedicae
           SmR1]
          Length = 443

 Score =  555 bits (1431), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 303/437 (69%), Positives = 341/437 (78%), Gaps = 9/437 (2%)

Query: 12  HIAVIGGGWAGCAAAVTLAQAGKRVSLFEAARTLGGRARRVDIDGRTLDNGQHILLGAYR 71
           H AVIG GWAGCAAAV LA  G RVSLFEAARTLGGRARRV+++ R +DNGQHILLGAYR
Sbjct: 7   HYAVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELEERVVDNGQHILLGAYR 66

Query: 72  STLSLMKTVGIDAGRAMLRLPLQMRYP--AGADGMDFVTPRLPAPWHMLVALFRATGLTR 129
           +TL+LMK VG+D+  A+LRLPLQMRYP    A+GMDFV PRLPAPWH+ VAL RA GLTR
Sbjct: 67  ATLALMKQVGVDSASALLRLPLQMRYPLQGNAEGMDFVAPRLPAPWHVAVALLRAKGLTR 126

Query: 130 EDKLALARFSTTARWMGWQLHDDCSVTELLERFDQTDRLNRLMWTPLCIAALNTPPQRAS 189
           EDK+ALARFSTTARWMGWQLH DCSV+ELL RFDQT R+ RLMW PLCIAALNTPP+RAS
Sbjct: 127 EDKMALARFSTTARWMGWQLHQDCSVSELLARFDQTPRVIRLMWRPLCIAALNTPPERAS 186

Query: 190 AQVFLNVLRDSLGARRAASDMLIPRTDLTALFPQQAAVFVESHGGSVTCGQAVASL--NA 247
           AQVFLNVLRDSLGARRAASDMLIPR DL+AL P  AA ++   GG V  G AVA L    
Sbjct: 187 AQVFLNVLRDSLGARRAASDMLIPRLDLSALLPDAAAAYLAKRGGLVQAGVAVAHLLPGQ 246

Query: 248 AEGRWNVAFKQGADPQSCDGVVIATAPEAAADLLEDLYDTATLRALAYEPITTCYLQYPA 307
            +  W +  + G       GVV+AT PEAAA LL+ L+DT+ L +L +EPITTCYL YP 
Sbjct: 247 QDTTWRLQDRAGESLGEFAGVVLATGPEAAAQLLQGLHDTSRLESLQHEPITTCYLHYPQ 306

Query: 308 HVRLQQPFFALTDDAGLAAWGQFVFDRGQLNGAAAPADAGLLAVVVSAAADAIAAGHAAM 367
             RL  PF AL DD    AWGQFVFDRGQL G     +AGLLAVVVSAA  AIA G AA+
Sbjct: 307 GARLPAPFLALADDPQRQAWGQFVFDRGQLGG-----EAGLLAVVVSAAGQAIADGQAAL 361

Query: 368 AAGVAVQLARQLADPQLRTPLWTKVISEKRATFSCTPGLLRPDNSGMPAGLALAGDYVAG 427
             GV  QLA   ADP L TP W++VI+EKRATF+CTPGL+RPD++ +PAGLALAGDYVAG
Sbjct: 362 TEGVTRQLASDFADPTLATPGWSRVITEKRATFACTPGLVRPDSADLPAGLALAGDYVAG 421

Query: 428 DYPATLEAAVRSGVAAA 444
           DYPATLE AVRS +AAA
Sbjct: 422 DYPATLEGAVRSAMAAA 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,241,283
Number of extensions: 47763
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)