BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0009.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirill...   525   e-150
gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirill...   100   2e-22

>gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  525 bits (1351), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/277 (90%), Positives = 261/277 (94%)

Query: 1   MSPDEYCQQKAAQSGSSFYYSFLFLPPERRRAITALYAFCREVDDTVDEIEDAGVARTKL 60
           MSPDEYCQQKAA SGSSFYYSFLFLPP+RR AITALYAFCREVDDTVDEIED  VARTKL
Sbjct: 1   MSPDEYCQQKAAASGSSFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDTMVARTKL 60

Query: 61  MWWRKEIASMLNGNPSHPVTLALQPHVATYGLKGEHLQAIIDGMEMDLDQTRYLDYPGLQ 120
           MWWRKEIA+ML G P+HPVT AL PHVATYGLKGEHLQAIIDGMEMDLDQ+RYLDYPGLQ
Sbjct: 61  MWWRKEIAAMLEGQPTHPVTKALHPHVATYGLKGEHLQAIIDGMEMDLDQSRYLDYPGLQ 120

Query: 121 RYCWHVAGVVGILSASIFGVTQGGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE 180
           RYCWHVAGVVG+LSASIFG TQ GTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE
Sbjct: 121 RYCWHVAGVVGVLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE 180

Query: 181 LQQFNVTAADILNARHSENFEKLMRFQVERAQRVYDEAFALLPKEDRRAQRPGLMMSAIY 240
           LQQFNVTAADILNARHSE FE LM+FQVERAQ VYDEAFALLP+EDRRAQRPGLMM+AIY
Sbjct: 181 LQQFNVTAADILNARHSERFEALMKFQVERAQAVYDEAFALLPREDRRAQRPGLMMAAIY 240

Query: 241 RTLLTEIERDGFHVLNQRISLTPIRKLWLAWKTYIRG 277
           RTLL EI RDG+HVL+QRISLTPIRKLWLAWKTY+ G
Sbjct: 241 RTLLDEIARDGYHVLHQRISLTPIRKLWLAWKTYVFG 277


>gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 269

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 10/259 (3%)

Query: 17  SFYYSFLFLPPERRRAITALYAFCREVDDTVDEIEDAGVAR-TKLMWWRKEIASMLNGNP 75
           +F  + L LP   R A+T +YAF R  DD  DE + A   R   L  +  ++  +    P
Sbjct: 8   NFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLDLIARQQP 67

Query: 76  -SHPVTLALQPHVATYGLKGEHLQAIIDGMEMDLDQTRYLDYPGLQRYCWHVAGVVGILS 134
            + P+   L+  +A + L  + L+ ++     D+  TRY  Y  L  YC   A  VG L 
Sbjct: 68  CATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSANPVGTLM 127

Query: 135 ASIFGVTQGGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADILNA 194
             ++G      L  ++ +  A QL N  +D+  D +K RIYLP+ +L +F VT  DI   
Sbjct: 128 LHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVTPEDIAAG 187

Query: 195 RHSENFEKLMRFQVERAQRVYDEAFALLPKEDRRAQRPGLMMSAIYR---TLLTEIERDG 251
           R    +++LMRF+VERA+ +     A  P   R   R G  +  + +    +L  IER  
Sbjct: 188 RCDGRWQQLMRFEVERARALM---LAGAPLAKRLPGRIGWELRLVVQGGLRILARIERVQ 244

Query: 252 FHVLNQRISLTPIRKLWLA 270
             V   R  L   +  WLA
Sbjct: 245 GDVFGHRPKLG--KADWLA 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 825,644
Number of extensions: 33413
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)