BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0008.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311903|ref|YP_003775995.1| signal transduction protein [He...   442   e-125

>gi|300311903|ref|YP_003775995.1| signal transduction protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  442 bits (1138), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/279 (74%), Positives = 250/279 (89%), Gaps = 1/279 (0%)

Query: 1   MNRLEAFRSIAVQAGRGELVFPTNVNASIKLQQALNDPNCHLEAASKLVMAEPLLSARTV 60
           M+RLE FR+IA QAGRGELVFP NV+ASIKLQ+AL DP+CHLE A+KLVMAEPL+SARTV
Sbjct: 1   MDRLEIFRNIASQAGRGELVFPANVSASIKLQKALADPDCHLELAAKLVMAEPLVSARTV 60

Query: 61  AIANSAAYNRSGGEINNVRTAVMRLGFKTLNAITTAVIVRQLGRNISDPEMRVKAAQLWE 120
           AIANSAAYNRSGGEINNVR AVMRLGF+TLN ITT+VIVRQLGR I++P MR+K+AQLWE
Sbjct: 61  AIANSAAYNRSGGEINNVRAAVMRLGFRTLNTITTSVIVRQLGRTINNPGMRIKSAQLWE 120

Query: 121 HTANVAALSQVIALKMTRLDPETAMFAGIVHEVGGFYLLSRTDEFPGLLDGNAEDWAEYG 180
           H A+VAA + V+  K+T+ DPETAMFAGIVHEVGGFYLLSRTD+FPGLLDG  EDW EYG
Sbjct: 121 HCAHVAATAYVLTAKLTKADPETAMFAGIVHEVGGFYLLSRTDDFPGLLDGGTEDWMEYG 180

Query: 181 EKMIGRAVLKKLGIPEAVMAAVESLWHGIRVLPPETLGDVLLLAKELSPVPSPFQKSAL- 239
           EKMIGRAVLKKLG+P+ V+ A+ESLWHG+RVLPP+T+GDVLLLAKELSPVPSP Q+S + 
Sbjct: 181 EKMIGRAVLKKLGVPQPVVDAIESLWHGVRVLPPQTIGDVLLLAKELSPVPSPLQRSVVA 240

Query: 240 EAGRQSDTIVDEFMGDDALRDVLEDSADEIRSLTSALLI 278
           EAG   + +VD+++GD +LR++L+DS ++IRSLT+ALL+
Sbjct: 241 EAGVGGENLVDDYIGDHSLRELLDDSEEQIRSLTAALLV 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 796,424
Number of extensions: 31046
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)