BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0007.p (413 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Her... 262 4e-71 gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Her... 254 6e-69 gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Her... 225 5e-60 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 487 Score = 262 bits (669), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 143/341 (41%), Positives = 207/341 (60%), Gaps = 12/341 (3%) Query: 6 FSSLPLTPAMLANLEQLGYHEMTTIQAASLPAALEGRDLIAQAKTGSGKTAAFGIGMLHK 65 F L+P +L L + GY T IQA ++P L+GRD++ A+TG+GKTA F + ++ + Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 Query: 66 L--------NPSYFAIQGLVICPTRELADQVSNELRRLARFTDNIKILTLCGGTAMRPQI 117 L +P+ ++ L++ PTRELADQV++ + RFT ++ + GG M PQ Sbjct: 78 LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP-LRSTVVFGGVDMAPQT 136 Query: 118 ASLEHGTHIVVGTPGRIRDHIGRGTINLATVQTLVLDEADRMVDMGFYEDIEGIVSACPA 177 A L G IV+ TPGR+ DH+ + T+NL+ Q LV+DEADRM+DMGF D++ I++ P Sbjct: 137 AILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 196 Query: 178 RRQTLLFSATYPDDIRKASARFLRDPEEIKVEARHD--GDKIEQRFFEVSAEQRNFAVAR 235 +RQ LLFSAT+ +I+K +A F +P I+V AR + + + Q ++V + AV+ Sbjct: 197 QRQNLLFSATFSPEIKKLAASFQNNPVTIEV-ARSNATAENVTQTIYKVEEAAKADAVSF 255 Query: 236 LLQHYQPVSTLAFCNTKIHCRELADELRAQGFSALALYGDLEQRERDEILVQFSNQSCSV 295 +++ + + F NTKI LA L A+G A A++GD Q ER L F V Sbjct: 256 IIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEV 315 Query: 296 LVATDVAARGLDIANLGAVINVDVTRDTEVHIHRIGRTGRG 336 LVATDVAARGLDIA L VIN D+ + E ++HRIGRTGR Sbjct: 316 LVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRA 356 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 254 bits (650), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 136/341 (39%), Positives = 211/341 (61%), Gaps = 13/341 (3%) Query: 5 SFSSLPLTPAMLANLEQLGYHEMTTIQAASLPAALEGRDLIAQAKTGSGKTAAFGIGMLH 64 SFS+L L+ ++ + + GY T IQA ++PA L G DL+A A+TG+GKTA F + +L Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61 Query: 65 KLNP-------SYFAIQGLVICPTRELADQVSNELRRLARFTDNIKILTLC--GGTAMRP 115 +L+ + I+ L++ PTRELA QV +R+ ++ + + + C GG + P Sbjct: 62 RLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKY---LPLTSACIFGGVGINP 118 Query: 116 QIASLEHGTHIVVGTPGRIRDHIGRGTINLATVQTLVLDEADRMVDMGFYEDIEGIVSAC 175 QI L+ G I+V TPGR+ DH+ +GT+NL +Q LVLDEADRM+DMGF DI +++A Sbjct: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAAL 178 Query: 176 PARRQTLLFSATYPDDIRKASARFLRDPEEIKVEARHDG-DKIEQRFFEVSAEQRNFAVA 234 P +RQ LLFSAT+ D+I+K + L +P I+V R+ + I Q+ V ++++ +A Sbjct: 179 PPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLA 238 Query: 235 RLLQHYQPVSTLAFCNTKIHCRELADELRAQGFSALALYGDLEQRERDEILVQFSNQSCS 294 L++ +Q L F TK +L ++L G +A+A++G+ Q R + L +F + + Sbjct: 239 HLIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLT 298 Query: 295 VLVATDVAARGLDIANLGAVINVDVTRDTEVHIHRIGRTGR 335 L+ATD+AARG+DI L V+N D+ E ++HRIGRTGR Sbjct: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGR 339 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 510 Score = 225 bits (574), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 196/362 (54%), Gaps = 33/362 (9%) Query: 5 SFSSLPLTPAMLANLEQLGYHEMTTIQAASLPAALEGRDLIAQAKTGSGKTAAFGIGMLH 64 +F +L L P+++ L + GY T +Q ++PAA+ G+DL+ ++TGSGKTAAF + LH Sbjct: 2 TFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLH 61 Query: 65 KL-------------------------NPSYFAIQG--LVICPTRELADQVSNELRRLAR 97 +L P Y Q LV+ PTRELA QV+ + Sbjct: 62 QLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGA 121 Query: 98 FTDNIKILTLCGGTAMRPQIASLEHGTHIVVGTPGRIRDHIGRGTINLATVQTLVLDEAD 157 + ++++++ GG Q+ L I+V TPGR+ DH+ G I+ + +Q LVLDEAD Sbjct: 122 YMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEAD 181 Query: 158 RMVDMGFYEDIEGIVSACPARRQTLLFSATYPDDIRKASARFLRDPEEIKVEA---RHDG 214 RM+DMGF +DIE IV+A PA RQT+LFSAT + + R +P I++ + RH Sbjct: 182 RMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRH-- 239 Query: 215 DKIEQRF-FEVSAEQRNFAVARLLQHYQPVSTLAFCNTKIHCRELADELRAQGFSALALY 273 + I QR F +N + LL+ + F TK +AD L GF+A AL+ Sbjct: 240 ENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALH 299 Query: 274 GDLEQRERDEILVQFSNQSCSVLVATDVAARGLDIANLGAVINVDVTRDTEVHIHRIGRT 333 GD+ Q R+ L +LVATDVAARG+D+ + V N D+ + E ++HRIGRT Sbjct: 300 GDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRT 359 Query: 334 GR 335 GR Sbjct: 360 GR 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,128,535 Number of extensions: 44857 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 3 Length of query: 413 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 325 Effective length of database: 1,203,190 Effective search space: 391036750 Effective search space used: 391036750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)