BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0002.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirill...   389   e-109
gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirill...    94   2e-20

>gi|300311902|ref|YP_003775994.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 269

 Score =  389 bits (998), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/269 (72%), Positives = 218/269 (81%), Gaps = 1/269 (0%)

Query: 1   MAVDHYENFPVASVLLPARLRPAVKAIYAFARSADDIADEGDATPPQRLAALDAYDQALD 60
           MAVDHYENFPVAS+LLPARLRPAV  IYAFARSADDIADEGDA P +RLA L AY+  LD
Sbjct: 1   MAVDHYENFPVASLLLPARLRPAVTDIYAFARSADDIADEGDAAPEERLAGLHAYEAQLD 60

Query: 61  DIDASRATSNPMFTALAGIIRAYRLPLAPFRDLLSAFRQDVVTTRYQGFDELLDYCRRSA 120
            I   +  + PMF  L   I  + LPL P RDLLSAFRQDVVTTRY+ + +LLDYCRRSA
Sbjct: 61  LIARQQPCATPMFERLRHTIARHELPLQPLRDLLSAFRQDVVTTRYEHYTDLLDYCRRSA 120

Query: 121 NPVGALMLHLYDAATPENLRDSDAICSALQLINFWQDVAIDWQKQRIYLPLDDLDRFGVN 180
           NPVG LMLHLY AA+ ENLRDSDAICSALQLINFWQD+AIDWQKQRIYLPL+DL RFGV 
Sbjct: 121 NPVGTLMLHLYGAASEENLRDSDAICSALQLINFWQDIAIDWQKQRIYLPLEDLARFGVT 180

Query: 181 EQDIASANAGTAWQALLRFEIDRARAMML-GAPLARRLRGRIGWELRMVVQGGLRILERL 239
            +DIA+      WQ L+RFE++RARA+ML GAPLA+RL GRIGWELR+VVQGGLRIL R+
Sbjct: 181 PEDIAAGRCDGRWQQLMRFEVERARALMLAGAPLAKRLPGRIGWELRLVVQGGLRILARI 240

Query: 240 EQADGDVFTRRPKLGKRDWLLVVWRALTM 268
           E+  GDVF  RPKLGK DWL V  RALTM
Sbjct: 241 ERVQGDVFGHRPKLGKADWLAVGGRALTM 269


>gi|300311904|ref|YP_003775996.1| phytoene synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 2/200 (1%)

Query: 8   NFPVASVLLPARLRPAVKAIYAFARSADDIADEGDATPPQRLAALDAYDQALDDIDASRA 67
           +F  + + LP + R A+ A+YAF R  DD  DE + T   R   +    +    ++    
Sbjct: 17  SFYYSFLFLPPQRRLAITALYAFCREVDDTVDEIEDTMVARTKLMWWRKEIAAMLEGQ-- 74

Query: 68  TSNPMFTALAGIIRAYRLPLAPFRDLLSAFRQDVVTTRYQGFDELLDYCRRSANPVGALM 127
            ++P+  AL   +  Y L     + ++     D+  +RY  +  L  YC   A  VG L 
Sbjct: 75  PTHPVTKALHPHVATYGLKGEHLQAIIDGMEMDLDQSRYLDYPGLQRYCWHVAGVVGVLS 134

Query: 128 LHLYDAATPENLRDSDAICSALQLINFWQDVAIDWQKQRIYLPLDDLDRFGVNEQDIASA 187
             ++    P  L  ++ +  A QL N  +DV  D +K RIYLP+++L +F V   DI +A
Sbjct: 135 ASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADILNA 194

Query: 188 NAGTAWQALLRFEIDRARAM 207
                ++AL++F+++RA+A+
Sbjct: 195 RHSERFEALMKFQVERAQAV 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,856
Number of extensions: 26772
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)