BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0004.p (409 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 408 e-115 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 245 5e-66 gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 177 1e-45 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 113 3e-26 gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 102 8e-23 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 189/376 (50%), Positives = 265/376 (70%) Query: 34 ERMPPVRVIAIALSLLSACAFAQERQVVRFGFSSPLSGPQAAAGKDALNGVQMAIERLNQ 93 +R+ + +IA +L+L+ A A AQE QVV+ GFSSPL+GPQA+AGKD G+ MAIERLN Sbjct: 3 KRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERLNA 62 Query: 94 QDLQLDGKAIRFELLARDDKASPQEGAAVARELVAAGVRAVLGPFNSGVALSVTRIYNDA 153 Q + + GK I+F+++A DD+A P+ G AVA++L GV+A++GP+NSGV + +R+YNDA Sbjct: 63 QPITVGGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDA 122 Query: 154 GVVSLTVASNPKVTQSALTQVFRIAASDADMGGKMGLYAARHLKLKKMAVLDDGSLYARG 213 G+V TVASNPK+TQ +FR+AASD+ +GGKM LYAA+ LK K++AV+DD + Y +G Sbjct: 123 GIVVATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQG 182 Query: 214 LIDKFERVAKMNGVQLVYKEAVGDKAEEFGTALNAIAAAKADAIFFGGYVSQAGALLRQM 273 L +F +VAK NG+ +V + DKA +F L +I K DA+F GGY Q G + RQM Sbjct: 183 LAQEFIKVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQM 242 Query: 274 QQRGMAIPLLGGDALCSSTMLVQAGSALGDRTYCVQGGVWLTRVSDGAVFASAYQGKYGS 333 +Q G+ +PL+GGD +CS M G A+G+ YC QGG L + +G VF+ YQ KY Sbjct: 243 KQLGVDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKYNR 302 Query: 334 MPDVYAPTFYDGVLLLWQAMKSANSPDPRVFAPVLARMRYKGVTATYEFNSRHDMTEATV 393 + YA +FYDG++L+ QAMK ANS DP+ F P LA++ YKGV Y+F++ HD+ ++ V Sbjct: 303 PAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQSPV 362 Query: 394 TILRFKDGRLVPLSSF 409 T+ RFKDG VPL+S+ Sbjct: 363 TVYRFKDGLPVPLTSY 378 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 245 bits (625), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 214/364 (58%), Gaps = 8/364 (2%) Query: 43 AIALSLLSACAFAQERQVVRFGFSSPLSGPQAAAGKDALNGVQMAIERLNQQDLQLDGKA 102 AI L+ A A++QE VV+ PLSGP A GKD NG +MA++ LN + + GK Sbjct: 13 AIGLAFAGA-AYSQE--VVKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKGFTIGGKK 69 Query: 103 IRFELLARDDKASPQEGAAVARELVAAGVRAVLGPFNSGVALSVTRIYNDAGVVSLT-VA 161 ++FEL+ DD + P++ AVA +LV V AV+G NSG + ++IY+DAG+ ++ A Sbjct: 70 VKFELVGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSA 129 Query: 162 SNPKVTQSALTQVFRIAASDADMGGKMGLYAARHLKLKKMAVLDDGSLYARGLIDKFERV 221 +NPK TQ FR+ A+DA +G +G YA + L K++AV+DD + Y +G+ D+F + Sbjct: 130 TNPKYTQQGFKTAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVADEFAKG 189 Query: 222 AKMNGVQLVYKEAVGDKAEEFGTALNAIAAAKADAIFFGGYVSQAGALLRQMQQRGMAIP 281 AK G +V + DKA +F L ++ K D +FFGG + G +LRQM+Q G++ Sbjct: 190 AKAAGGTIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQMKQLGISAK 249 Query: 282 LLGGDALCSSTMLVQAGSALG-DRTYCVQ-GGVWLTRVSDGAVFASAYQGKYGSMPDVYA 339 +GGD +C+ ++ AG LG D+ C + GGV F +AY+ K+G + VY Sbjct: 250 FMGGDGICTGSLPGLAGDGLGDDQVICAEAGGVDEAGKKGMDDFRAAYKKKFG-IDVVYN 308 Query: 340 PTF-YDGVLLLWQAMKSANSPDPRVFAPVLARMRYKGVTATYEFNSRHDMTEATVTILRF 398 + YD + + AM A S DP+ + P LA++ +KGVT F+++ D+ + ++T+ + Sbjct: 309 AAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDIKDGSLTLYTY 368 Query: 399 KDGR 402 K G+ Sbjct: 369 KGGQ 372 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/355 (30%), Positives = 182/355 (51%), Gaps = 2/355 (0%) Query: 56 QERQVVRFGFSSPLSGPQAAAGKDALNGVQMAIERLNQQDLQLDGKAIRFELLARDDKAS 115 QE + GF+ PLSGP GK NGVQ+A+ N++ L++ GK+ + L+A+DD+A Sbjct: 35 QETATLAIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRLIAQDDRAD 94 Query: 116 PQEGAAVARELVAAGVRAVLGPFNSGVALSVTRIYNDAGVVSLT-VASNPKVTQSALTQV 174 P VAR LV V AV+G + SG +L+ +Y+ AGV+ +T A + ++T + ++ Sbjct: 95 PATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTAMSYPRI 154 Query: 175 FRIAASDADMGGKMGLYAARHLKLKKMAVLDDGSLYARGLIDKFERVAKMNGVQLVYKEA 234 FR ++ +G YA L+ + + +DD + + +GL ++F R A G Q+V + + Sbjct: 155 FRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYS 214 Query: 235 VGDKAEEFGTALNAIAAAKADAIFFGGYVSQAGALLRQMQQRGMAIPLLGGDALCSSTML 294 V DK +F AL + D IFFGG QAG L + +++ + L+ L Sbjct: 215 VSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPGTLGLPFL 274 Query: 295 VQAGSALGDRTYCVQGGVWLTRVSDGAVFASAYQGKYGSMPDVYAPTFYDGVLLLWQAMK 354 ++AG + ++ G ++ F Y + S D+YA Y+ + Q ++ Sbjct: 275 MRAGPD-ANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIR 333 Query: 355 SANSPDPRVFAPVLARMRYKGVTATYEFNSRHDMTEATVTILRFKDGRLVPLSSF 409 A S DP A + R+R++GV+ FN D+ + + T+ KD R P++ F Sbjct: 334 QAGSADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARF 388 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 168/366 (45%), Gaps = 14/366 (3%) Query: 40 RVIAIALSLLS--ACAFAQERQVVRFGFSSPLSGPQAAAGKDALNGVQMAIERLNQQDLQ 97 RV+A L L + +AQER+ + GF+ LS P A + AL G Q+AI+ N + Sbjct: 8 RVLAGVLLLWAFMQAGWAQERKTIALGFTGRLSEPIA---QSALQGAQLAIDEANALAAK 64 Query: 98 LDGKAIRFELLARDDKASPQEGAAVARELVAAGVRAVLGPFNSGVALSVTRIYNDAGVVS 157 +RFELL +DD + +AR V V V+GP++S AL+ IY A + Sbjct: 65 RRSP-LRFELLPQDDHGNENFAVNIARYYVKEKVAGVIGPWSSDAALATAAIYESAQIPQ 123 Query: 158 LT-VASNPKVTQSALTQVFRIAASDADMGGKMGLYAARHLKLKKMAVLDDGSLYARGLID 216 + A++ + T FR+ ++ + A R L+ +++ V+ + Y+R L D Sbjct: 124 IGFTATSSQWTGMGNRMPFRVVGGTRELAATLAEVATRSLQGRRIFVIQSDAAYSRALAD 183 Query: 217 KFERVAKMNGVQL-VYKEAVGDKAEEFGTALNAIAAAKADAIFFGGYVSQAGALLRQMQQ 275 + Q+ + + VG ++ +F AL A A +AD I F G QA A + + Sbjct: 184 TLVENLGGSAQQIALARYQVGRRSTDFHAALKAAEAHQADVIVFVGLYPQARAFIDGANR 243 Query: 276 -RGMAIPLLGGDALCSSTMLVQAGSALGDRTYCVQGGVWLTRVSDGAVFASAYQGKYGSM 334 R A LL G A S + + A L R + ++ + V YQ ++G+ Sbjct: 244 TRTTARLLLTGGA---SNLSLPAPLEL--RLHVLEYEIARPHCPQWKVVTQTYQRRFGAA 298 Query: 335 PDVYAPTFYDGVLLLWQAMKSANSPDPRVFAPVLARMRYKGVTATYEFNSRHDMTEATVT 394 P Y+ YD +L A+ A S + A L RMR+ G+ T F++ T Sbjct: 299 PTTYSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANAHPRYT 358 Query: 395 ILRFKD 400 +LR+++ Sbjct: 359 LLRYQE 364 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/338 (23%), Positives = 147/338 (43%), Gaps = 19/338 (5%) Query: 59 QVVRFGFSSPLSGPQAAAGKDALNGVQMAIERLNQQDLQLDGKAIRFELLARDDKASPQE 118 + V+ + P++G A G G AIE++N +FE + DD P++ Sbjct: 27 ETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAG---GANGNKFEAVMMDDACEPKQ 83 Query: 119 GAAVARELVAAGVRAVLGPFNSGVALSVTRIYNDAGVVSLT-VASNPKVTQSALTQ-VFR 176 AVA ++V+ G++ V+G SG + + IY + GVV +T A+ P++T++ + +FR Sbjct: 84 AVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFR 143 Query: 177 IAASDADMGGKMGLYAARHLKLKKMAVLDDGSLYARGLIDKFERVAKMNGVQLVYKEAVG 236 D G Y LK KK+AVL D Y +G+ + V +V E + Sbjct: 144 TIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEGIN 203 Query: 237 DKAEEFGTALNAIAAAKADAIFFGGYVSQAGALLRQMQQRGMAIPLLGGDALCSSTMLVQ 296 ++ + + + D ++FGGY + G ++RQ +++G+ +G + + + + Sbjct: 204 AGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGPEGVGNKDITAI 263 Query: 297 AGSALGDRTYCVQGGVWLTRVSDGAVFASAYQGKYGSMPDVYAPT------FYDGVLLLW 350 AG A G+ +T +D A + P Y GV ++ Sbjct: 264 AGPA--------SEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQMPAYSGVKIIA 315 Query: 351 QAMKSANSPDPRVFAPVLARMRYKGVTATYEFNSRHDM 388 A+ A S DP A + +K E++ + D+ Sbjct: 316 DAIAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDL 353 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,246,829 Number of extensions: 50609 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 10 Length of query: 409 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 322 Effective length of database: 1,207,925 Effective search space: 388951850 Effective search space used: 388951850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)