BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0003.p (154 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 301 1e-83 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 164 2e-42 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 131 2e-32 gi|300310455|ref|YP_003774547.1| AsnC family transcription regul... 104 3e-24 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 100 5e-23 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 301 bits (772), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 147/154 (95%), Positives = 150/154 (97%) Query: 1 MATLDKISKKILSELQNDGRISNVDLAARVNLSPAACLERVRKLQDAGYILGYAAQLNPE 60 MA LDKISKKIL+ELQNDGRISNVDLAARVNLSPAACLERVRKLQ+AGYILGYAAQLNPE Sbjct: 1 MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE 60 Query: 61 LLDVSLLVFIEVVLDRTTADVFEAFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120 LLDVSLLVFIEVVLDRTT DVF FKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR Sbjct: 61 LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120 Query: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPIK 154 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPI+ Sbjct: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPIR 154 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 164 bits (416), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 74/151 (49%), Positives = 108/151 (71%) Query: 3 TLDKISKKILSELQNDGRISNVDLAARVNLSPAACLERVRKLQDAGYILGYAAQLNPELL 62 TLDK+ +IL+ LQ DGRIS +L +V LS C+ERVR+++ G I GY A++NPE L Sbjct: 10 TLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESL 69 Query: 63 DVSLLVFIEVVLDRTTADVFEAFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREF 122 +LLVF+E+ L+ + ++FE F++ V IPE+ ECH+V+G FDYL+K+R++ M YR+ Sbjct: 70 GATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKL 129 Query: 123 LGKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 LG LLQL G ++ +Y VMEE+K T+ LP+ Sbjct: 130 LGDILLQLPGAAQSKSYVVMEEIKETLALPL 160 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 131 bits (330), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 98/152 (64%) Query: 3 TLDKISKKILSELQNDGRISNVDLAARVNLSPAACLERVRKLQDAGYILGYAAQLNPELL 62 +LD++ K+IL LQ DGRI N +LA ++ +S AC ++L + GY+ A L+PE L Sbjct: 2 SLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKL 61 Query: 63 DVSLLVFIEVVLDRTTADVFEAFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREF 122 + +LV + VVLDR+T + F F+K+V+ I + EC ++AG FDY +K RVKD+ A+ Sbjct: 62 GLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRL 121 Query: 123 LGKSLLQLKGVRETHTYAVMEEVKNTIRLPIK 154 +LL+L GVR+ ++ V+ EVKN L ++ Sbjct: 122 HANTLLRLPGVRQLRSFFVLNEVKNNPELVVE 153 >gi|300310455|ref|YP_003774547.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 104 bits (260), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 86/140 (61%) Query: 4 LDKISKKILSELQNDGRISNVDLAARVNLSPAACLERVRKLQDAGYILGYAAQLNPELLD 63 LD+I +IL LQ + RI+NV LA V LSP+ CL RV++L+ AGYI GY A + E L Sbjct: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 Query: 64 VSLLVFIEVVLDRTTADVFEAFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 +VF EV L + F F+ +++++ EI+ECH+V+GG+DYL+K + + Y+ + Sbjct: 69 DVQIVFTEVTLSDHRREDFAKFESTIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVI 128 Query: 124 GKSLLQLKGVRETHTYAVME 143 L Q + + +Y V++ Sbjct: 129 ESLLEQNLRIEKYFSYIVIK 148 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 100 bits (249), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 89/151 (58%) Query: 4 LDKISKKILSELQNDGRISNVDLAARVNLSPAACLERVRKLQDAGYILGYAAQLNPELLD 63 +D+ +L+ELQ DG I+N L +V+LS + RV++L++A I Y A L+P ++ Sbjct: 6 VDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65 Query: 64 VSLLVFIEVVLDRTTADVFEAFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 + + F V LDR E F+K+V+++PE+ EC V G DY+++ D+ A+ EF+ Sbjct: 66 LGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125 Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPIK 154 LL+L GV + +++VK + LP++ Sbjct: 126 MTRLLRLPGVTNVKSNITLKKVKQSHELPLE 156 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 405,741 Number of extensions: 14305 Number of successful extensions: 44 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 9 Length of query: 154 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 77 Effective length of database: 1,255,275 Effective search space: 96656175 Effective search space used: 96656175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)