BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0260.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309655|ref|YP_003773747.1| hypothetical protein Hsero_0313...   213   4e-57

>gi|300309655|ref|YP_003773747.1| hypothetical protein Hsero_0313
           [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score =  213 bits (543), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 125/167 (74%)

Query: 1   MSLTMHQISIPVFIRALNNLSTLLNKAAAHAEENKLDPDTLLTARLFEDMYPLTGQIQRA 60
           MSL+++Q+SIP+ I  L+ LSTLL KA  HA +++LDP+ LLTARL+EDMY L+GQ+QRA
Sbjct: 1   MSLSLYQVSIPMLIHGLDTLSTLLEKAEQHAAQHQLDPNELLTARLYEDMYALSGQVQRA 60

Query: 61  SDAAKFGASRLSAIQPPSFADEETTFPQLQERIARTIAFLETVTPEQLDGSAEREIVIKL 120
           SD AK  ASRLS +  P+FAD+E +F  LQ RI +TI FLE++  + +DG  ER + +KL
Sbjct: 61  SDTAKATASRLSGVAAPAFADDEASFDDLQARINKTIVFLESIPADAIDGQEERAVTMKL 120

Query: 121 RGNETKFTGQAYLLTFALPNFLFHVTTAYDILRHKGVKIGKMDYLGF 167
           RG E   T Q YL  F LPNF FHVTTAY ILRHKGVK+GKMD+L  
Sbjct: 121 RGEERTMTAQHYLTAFGLPNFFFHVTTAYGILRHKGVKLGKMDFLAL 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,190
Number of extensions: 16997
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)