BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0257.p
         (502 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309654|ref|YP_003773746.1| sulfate permease family protein...   772   0.0  

>gi|300309654|ref|YP_003773746.1| sulfate permease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/488 (78%), Positives = 426/488 (87%), Gaps = 5/488 (1%)

Query: 3   TTSFRDEWFSHGKANVLAGLTSSFALVPECIAFALVAQINPLMGLYGAFFICTITALFGG 62
           T+  RD      + NVLAGLT+SFALVPECIAFALVAQ+NPLMGLYGAFFICTITALFGG
Sbjct: 15  TSRLRDL-----RQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICTITALFGG 69

Query: 63  RPGMISGAAGSMAVVIVALVAQHGAQYFLLTVVLSGVLMLLFGALRLGKLIRMVPHPVML 122
           RPGMISGAAGSMAVVIVALV QHGAQYFL TVVLSG++ML FGALRLGKL+RMVPHPVML
Sbjct: 70  RPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLVRMVPHPVML 129

Query: 123 GFVNGLAIVIAMAQFEHFKQTDASGTHWLHGAPLLIMAVLVAVTMLIVYLLPRLTRAIPP 182
           GFVNGLAIVIA++Q EHF+   A+GT WL G+ L +M  L   TMLIV+LLPR+T+A+PP
Sbjct: 130 GFVNGLAIVIALSQLEHFRIATAAGTQWLQGSALWVMIALTLATMLIVWLLPRVTKAVPP 189

Query: 183 ALAAIVGVAVLSQATGLPTRTLGDMAHIAGGLPMWHFPEVPLTLETLRIVAPYAVLMAIV 242
           ALAAI+GV +++ A+GL TRTL DMA IAGGLP  H P VPLTLETLRI+ PYAVLMAIV
Sbjct: 190 ALAAILGVGLVTYASGLHTRTLADMAQIAGGLPPLHLPSVPLTLETLRIIGPYAVLMAIV 249

Query: 243 GLLETLLTLNLTDEITETRGQANRECLALGAANVMSGLFGGMGGCAMIGQTMINLSSGGR 302
           GLLETLLT NLTDEIT TRGQ NRECLALGAAN++SGLFGGMGGCAMIGQTMINL SGGR
Sbjct: 250 GLLETLLTFNLTDEITATRGQPNRECLALGAANIVSGLFGGMGGCAMIGQTMINLGSGGR 309

Query: 303 SRLSGVVSGVMILLFILFLSPLIERIPLAALVGVMFVVAQQTFAWGSLRVLGKVPRNDAL 362
           SRLSGVV+GVMILLFILFLSP IERIPLAAL GVMFVVAQ+TFAWGSLRVLGKVPR+DAL
Sbjct: 310 SRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVLGKVPRSDAL 369

Query: 363 VIVAVTVITVFTDLAVAVLCGIVIAALNFAWQHAREIRAEVQDSGDGEKTYVPHGTLFFA 422
           VI+AVTVITV TDLAVAVLCGIVIAALNFAWQHARE+R++V+D  DG +TY+PHGTLFFA
Sbjct: 370 VIIAVTVITVLTDLAVAVLCGIVIAALNFAWQHAREVRSDVRDEDDGSRTYLPHGTLFFA 429

Query: 423 STAHFQELFDPAQDPQRVVVDCRHLHLADHSAIAALEALSERYTRAGKHLRLAQLSRRSH 482
           ST HF  LFD   DPQ V +DCRHL LADHSAIAA++ L+ERYTR GK LR+  LS+R  
Sbjct: 430 STTHFLALFDTGNDPQEVTLDCRHLRLADHSAIAAVQTLAERYTRMGKQLRVVALSQRCS 489

Query: 483 QLLQRVGM 490
           QLLQR G+
Sbjct: 490 QLLQRAGL 497


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,439,451
Number of extensions: 56612
Number of successful extensions: 313
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,198,455
Effective search space: 494961915
Effective search space used: 494961915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)