BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0248.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313637|ref|YP_003777729.1| thiol:disulfide interchange sig...   359   e-100

>gi|300313637|ref|YP_003777729.1| thiol:disulfide interchange signal
           peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 162/218 (74%), Positives = 191/218 (87%), Gaps = 4/218 (1%)

Query: 1   MRLFRHALAVISLGLLA----VSASASPANPQSGTDYRTLEQAQPTESGKKIEVTEFFWY 56
           MR  +  LA +S G+LA    V ASASPANPQ+GTDYR LEQAQPT+SG K+EVTEFFW+
Sbjct: 1   MRFHQKLLAAVSFGVLAFTASVGASASPANPQAGTDYRVLEQAQPTDSGNKVEVTEFFWF 60

Query: 57  SCPHCAAFDPALTAWVKKQGDKIVFKQVPVAFRESFIPQQKLYYALEAMGKTAEMNPKIF 116
            CPHCAA+DP+LTAWVKKQGDKI FK+VPVAFR+SF+PQQKLYY LEAMG+  E+ PKIF
Sbjct: 61  DCPHCAAWDPSLTAWVKKQGDKISFKKVPVAFRDSFVPQQKLYYTLEAMGRADELTPKIF 120

Query: 117 QAIHVDRQRVDTDKTILEFIEKQGIDKQKFVDLYNSFGVQTKVRRASQLQEAYKIDGVPT 176
            AIHV+ QR++TDKTIL +IEK GIDKQKF+DLYNSFG+QTK RRA+QLQEAYK+DGVP 
Sbjct: 121 HAIHVENQRINTDKTILAYIEKAGIDKQKFLDLYNSFGIQTKARRAAQLQEAYKVDGVPM 180

Query: 177 IAIDGRYLTSPSIAGASMANQPESMQQAASLQVMDHLL 214
           IAIDGRY+TSP++ G ++ANQPESMQQAA+LQVMDHL+
Sbjct: 181 IAIDGRYVTSPAVVGVALANQPESMQQAAALQVMDHLV 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,422
Number of extensions: 20579
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)