BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0245.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase [Herbas...   130   2e-31

>gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 577

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 145/300 (48%), Gaps = 62/300 (20%)

Query: 35  RPLRSHARPTKTTHHRIIPGRRPRPXREELISSADIAGPGFINLRVADAAKQAVVKVVLA 94
           +PL+ + R        I+      P RE+L+ S +IAGPGFINLRVA AAKQAVVKV+  
Sbjct: 53  KPLKKNPRELAQA---IVAAVMADPAREDLVESVEIAGPGFINLRVAAAAKQAVVKVIHE 109

Query: 95  EGAQYGKSQAGAPPLFFCADRRFRPDANDYAGASARSVAWRHRLQPGHATGQAAQEEPAR 154
           +G  YG+  AGA            P                        TG      P  
Sbjct: 110 QGEAYGRGSAGAGKKVLVEFVSANP------------------------TG------PLH 139

Query: 155 TGPGAGGWRAVAARSRRTDFRSSTTSLSKGGNLGARRCWSNSFPPIRPVRCTSATAVRAR 214
            G G           R+     + +SL +       R +  +   ++     ++   RAR
Sbjct: 140 VGHG-----------RQGALGDALSSLLEAQGYDVLREFYYNDAGVQIATLATSVQARAR 188

Query: 215 SATPCRRCCSRRATTSRASSTTTTPIADDFKAKKTVSAHIADDFKAKKTVSASDGEPATA 274
              P        A     +      IA DF  KK              TVSASDGEP T 
Sbjct: 189 GFKPGDAEWPESAY----NGDYIADIARDFLDKK--------------TVSASDGEPVTG 230

Query: 275 SGDVEDLESIRRFAVAYLRREQDLDLQAFGVRFDNYYLESSLYTEGKVAAAVDALIKAGK 334
           SG+V+D+ESIRRFAVAYLR EQDLDLQAFGV+FDNYYLESSLY +GKVAAAVDALI AGK
Sbjct: 231 SGEVDDIESIRRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALIAAGK 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 867,604
Number of extensions: 29557
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)