BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0241.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...   207   3e-55
gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...    80   1e-16

>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  207 bits (527), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 111/127 (87%)

Query: 10  AQVVGTVTHLSGILTVKHADGKTAVMAVKSEIQQGDTLITEANTYTRVKFLDNGEIVLRP 69
           AQVVG VTHLSG+LT +HADG  AV++VKS I QGDTLITE  TYTRVKF+DN EIVLRP
Sbjct: 36  AQVVGQVTHLSGVLTARHADGTRAVLSVKSAILQGDTLITERETYTRVKFVDNAEIVLRP 95

Query: 70  GSQVVVKNYLYDAEKPAQDNVAISLVKGGLRAVTGLVGKRNHDAVSFDTPTATIGIRGTH 129
           G++V V  Y+YD +KP  D+VAI LVKGGLRAVTGLVGKRNH+AV+FDTPTATIGIRGTH
Sbjct: 96  GTEVAVNKYIYDEKKPENDSVAIGLVKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTH 155

Query: 130 FGALFCQ 136
           FGALFCQ
Sbjct: 156 FGALFCQ 162


>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 79.7 bits (195), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 27  HADGKTAVMAVKSEIQQGDTLITEANTYTRVKFLDNGEIVLRPGSQVVVKNYLYDAEKPA 86
             +GKT  +AV   + +GD ++T A +       D+  I L P SQ +++ ++++ EK  
Sbjct: 57  QREGKTRPLAVGERLYEGDRVLTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFN-EKTD 115

Query: 87  QDNVAISLVKGGLRAVTGLVGKRNHDAVSFDTPTATIGIRGTHF 130
           + N+A+ +VKG LR V+GL+GK   +   F TPTATIGIRGT F
Sbjct: 116 EGNIAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRGTDF 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 500,718
Number of extensions: 18359
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)