BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0237.p (1352 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her... 476 e-135 gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer... 122 2e-28 >gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Herbaspirillum seropedicae SmR1] Length = 1422 Score = 476 bits (1224), Expect = e-135, Method: Compositional matrix adjust. Identities = 312/615 (50%), Positives = 409/615 (66%), Gaps = 50/615 (8%) Query: 16 TLPTGFSVTYGNATYTVNGNLFTINQTSGKAIANFDTFSIGANAVVNISQPSAAAAFLAR 75 TLPTG+SV GN T+ NGN+ INQ S +AIA F +FSIGA+A VN++QPSAAAA LA+ Sbjct: 88 TLPTGWSVVNGNVTFIQNGNILNINQLSPQAIAQFLSFSIGADATVNVNQPSAAAALLAK 147 Query: 76 VTGSDPSLIYGLLKSNGSVALINQNGILVGPTGVVDVARFIASTLNVNDSDFLAGRLHFS 135 V+G D S IYG L + G+V L N NG+++GP+G +D RFIA++L ++DSDFLAG+L+F+ Sbjct: 148 VSGGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDSDFLAGKLNFA 207 Query: 136 GGGIAGNVENQGTIKTASGGSVYLIGANVDNNGVITSPNGEILLAAGQTVQLIDTGTPGV 195 G AG V+NQG I++A+GGSVYLIG++V N+G+I S GE++LAAG+TV L DT TPGV Sbjct: 208 RQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETVTLADTATPGV 267 Query: 196 TVNVTGATGKVTNLGAITAEAGRIGIAAGLISNSGDINASSVVNDGGRIFLRASQDLTTT 255 TVNVTG+ G VTNLG+ITAEAGRIG+AAGLI+NSG INASSVV +GGRIFLRASQ+LTT+ Sbjct: 268 TVNVTGSAGNVTNLGSITAEAGRIGVAAGLINNSGVINASSVVREGGRIFLRASQNLTTS 327 Query: 256 AASKVTADGAGKGGSVVLYSEKSAHLDGDISATGAAGRGGFIETSGKQSLDVVKMPTVGS 315 A+S + ADG+ +GG++ L ++ A +DGD+SATGA G+GGF+ETSG + LDVVK PT+G+ Sbjct: 328 ASSSIHADGS-RGGNIALVAQDQAFIDGDVSATGAPGQGGFVETSGLKRLDVVKAPTLGA 386 Query: 316 GGEWYIDPYNLEVVVETANNIIPDGGNPNI-ITSNGSSSFISASTINTLLNGNTNVTLAT 374 GG W IDP +LEVV + + GN + I++NGSSS I A TI L NVTLAT Sbjct: 387 GGTWLIDPSDLEVVSGGSRTVSTSTGNGSYAISANGSSSQIGADTIVGQLEAGVNVTLAT 446 Query: 375 GNGGAASGGNITVSADITKSGGAEAVLTLNADNNIVVNANITSTSDKLGLNLNTNAN--- 431 G G+ + GNITVS+ I K G A LTLNA NNI +NA+I STS L L L+T A Sbjct: 447 GADGSQA-GNITVSSAIVKQAGGAASLTLNAANNISINADIRSTSGALTLTLHTGAGEGV 505 Query: 432 GITTGVHSAQLNG-KIALNGGTLNVSDSVGGNANGNLTISNGGL-LDLASSLMNEGLPVG 489 + S NG +I+LNGG L D V G GNL ISNG + LD S+L Sbjct: 506 DFSAARQSTIGNGARISLNGGDLYAMDGVEG--RGNLLISNGSVWLDGTSTL-------- 555 Query: 490 GIVNTGNLTVNTGGTLAATFG-ATVNVNGMLRNNGTVNLQNSQLTASSLTNAASFTLGNV 548 G L ++ GG+L G ++V +N L NNGT+ + N Sbjct: 556 ---RAGRLQLDGGGSLVYASGNSSVTLNDALINNGTIQV-------------------NA 593 Query: 549 SGSL---GAVVNTGTLSL---SSIFAGLGASSFTNSGVLTAANSSVLNTDTFINNNGASV 602 SG L G V N G LSL +S+ A ++S +N+G +T +N + LN + NN A++ Sbjct: 594 SGRLYSDGGVYNNGNLSLADGTSLMA--SSTSLSNNGTVTLSNGT-LNFSSITNNQNATI 650 Query: 603 MVNASTLNATASFNN 617 + + S + A NN Sbjct: 651 LGSGSLVAAEGVVNN 665 Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 151/236 (63%), Gaps = 10/236 (4%) Query: 1109 GILNISGSARVSNLTLSGIGAINGGVGSTLSVTDSFSQSSGSVISSGGAVSLSQAADNLV 1168 G L + G R++ L ++ G + G +GS L V +SF Q+ G++ + A LSQ+ +L+ Sbjct: 1034 GDLTLGGDVRLAALNVTQ-GNVTGNIGSRLVVAESFQQTGGNLTLADAA--LSQSNGSLI 1090 Query: 1169 VGNITARNLVLEAQNGAITQTA--ALHVKQQLLTSSVTGTTLDAAANSIAAFAANNRGMG 1226 VGNITA NLVLEAQ+ I Q + ALHVKQQL+TS+ G +L N IA FAANN+G G Sbjct: 1091 VGNITANNLVLEAQSANIFQQSGSALHVKQQLITSATDGISLTETGNQIAGFAANNQGSG 1150 Query: 1227 NIVLVNNLATADTNAVRINGVTNANGSINISNTGAMATTTLGTGADFLTTLPTAPDLDPI 1286 +I L+N L TAD + V INGV +G I+I NTG M T LG A FL LP++ + DP Sbjct: 1151 DIRLINQLNTADASVVTINGVHTVHGDIHIDNTGGMRTAALGDSASFLGALPSSAEGDP- 1209 Query: 1287 PTLADRLTTLGIA--TGGAVRATGPAASVSLAAHSPLTIGSGGVTSSGGITLSAGA 1340 P A +L LG++ T G V+ A V++ HSP+ IG+GGV+++G ITL+A A Sbjct: 1210 PGTAAKLAMLGMSSNTNGQVKTDNGA--VTMVTHSPMAIGAGGVSATGDITLTASA 1263 >gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 1568 Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 134/249 (53%), Gaps = 15/249 (6%) Query: 10 SPPAPNTLPTGFSVTYGNATYTVNGNLFTINQTSGKAIANFDTFSIGANAVVNISQPSAA 69 SP P G VT G + + +GN TI Q+S N+ +F+ ++ VN QPSA+ Sbjct: 48 SPLLAQAAPVGGQVTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSAS 107 Query: 70 AAFLARVTGSDPSLIYGLLKSNGSVALINQNGILVGPTGVVDVARFIASTLNVNDSDFLA 129 A + R+ ++P+ +G L +NG V LIN NG+L G V+V +ASTL+++D+ A Sbjct: 108 AIAVNRIYDTNPTRFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAA 167 Query: 130 GRLHFSGGGIAGNVENQGTIKTASGGSVYLIGANVDNNGVITSPNGEILLAAGQTVQLID 189 +FSG G G++ NQG I A+GG V IG V N G IT+P G + LAAG V L Sbjct: 168 AARNFSGSGT-GSIINQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTF 226 Query: 190 TGTPGVTVNVTGATGKVTNL----GAITAEAGRIGIAAG--------LISNSGDINASSV 237 V + V T + NL G I A+ G + ++AG +++N+G I A SV Sbjct: 227 ANASLVKLQVNQNT--LNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSV 284 Query: 238 VNDGGRIFL 246 N GRI L Sbjct: 285 QNVNGRIVL 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.309 0.127 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,300,839 Number of extensions: 128484 Number of successful extensions: 681 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 561 Number of HSP's successfully gapped: 19 Length of query: 1352 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1255 Effective length of database: 1,160,575 Effective search space: 1456521625 Effective search space used: 1456521625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 137 (57.4 bits)