BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0235.p
         (535 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309648|ref|YP_003773740.1| hemolysin activation/secretion ...   646   0.0  

>gi|300309648|ref|YP_003773740.1| hemolysin activation/secretion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/526 (61%), Positives = 398/526 (75%), Gaps = 12/526 (2%)

Query: 15  ERFNITRFQVEGNSLLPADEVDRLVAPMVGQNSVYGDIQKALEALENAYRNAGYNAVQVY 74
           ERF I RF V GN+LLP D+V   VAP  GQ  VYGDIQ+ALEALEN YR+AGY AVQV+
Sbjct: 51  ERFEIRRFVVAGNTLLPQDQVQAAVAPFSGQGRVYGDIQQALEALENLYRSAGYTAVQVH 110

Query: 75  VPEQELTSGVVRIQVTEGTVGNITVTGNKYFSEQNIRASLPQLQSGKPPNLRKISEAVQL 134
           VPEQEL+SG VRI V E  VG + V+ N++FS+ NIRAS+P L+ G PPNLR+ISE+VQL
Sbjct: 111 VPEQELSSGEVRIDVVETVVGKVQVSENRHFSQANIRASIPALKEGVPPNLRRISESVQL 170

Query: 135 SNDNPAKQINVALGSGDDEGKIDAEVKVVDNNPLRVFLTADNTGVAATGHWRTGVAIQHA 194
           +NDNPAKQ+NV L +     +IDA+++V D++PLRV L  DNTG A TG WRTGVAIQH+
Sbjct: 171 ANDNPAKQVNVTLSAAQSGDQIDAKIEVKDDDPLRVMLNLDNTGSADTGRWRTGVAIQHS 230

Query: 195 NLFDRDQSGTLAYTTSPDSPSGVKVDVYSIGYRIPLYGIGDSLDFIYGKSSVNSPSSSPT 254
           NLF+RD   T+AYTTSPDSPSG KVD+YS+GYR+PLY +GDSLDFIYGKSSV+S   +  
Sbjct: 231 NLFNRDHVATVAYTTSPDSPSGSKVDLYSLGYRLPLYELGDSLDFIYGKSSVSS-GQTLA 289

Query: 255 LGGLLGFTGKGDIYGLRWNHFFARQGETSARLVFGIDYKKIDSRCSFGGIEFSIAPPTPP 314
           L   L  TG+G++Y LRWNHFFAR GE S++LV G DYKK+DS C+  G   + A     
Sbjct: 290 LNSTLNITGRGEVYALRWNHFFARNGEWSSKLVLGADYKKVDSSCAINGGLLNGA----T 345

Query: 315 VASCVPYTTAPLSVTYSSQTRSVGQSIDYNIGIARNWATGTAYTNTTSDGRTDRYSYLTP 374
           + +C+PY+T PLS+TYS+Q + VG+ ID NIG+ARN ATG A  N      TDRYS  T 
Sbjct: 346 LNTCLPYSTLPLSLTYSAQRQGVGEVIDANIGVARNMATGQARRNDALQ-VTDRYSLFTN 404

Query: 375 GSRNTVDDFIILRGGASIFKGFGNDWQMRIAGTAQYAKDPLVSAEQFGLAGSTAVRGFTE 434
           G R ++D+FI +RGGAS  K F NDWQMR+AG  Q +   L + EQFGLAG+TAVRGFTE
Sbjct: 405 G-RQSMDNFIAVRGGASWLKAFQNDWQMRLAGNLQLSPHALPAVEQFGLAGATAVRGFTE 463

Query: 435 RAVSADGGLVVNAEIYTPELLP----KGSLRLLAFYDVGRGYNNNV-GNSGIPSSLTVSS 489
           RAVSAD G+V+N+E+YTP+LL     KGS+RLLAF D GRG NNNV  NS + S+LT++S
Sbjct: 464 RAVSADSGVVLNSELYTPDLLAKSELKGSMRLLAFVDAGRGANNNVTANSQVQSTLTLAS 523

Query: 490 MGVGARYVYGRDFNIKLDVGRVGNPGNSATEKRGDLNAHVSASLGF 535
           +G G RY  GRDFN++LDV RV   GNS TE+RGDLNAH+SA+LGF
Sbjct: 524 IGAGLRYALGRDFNLRLDVARVLLNGNSITEQRGDLNAHLSATLGF 569


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,675,174
Number of extensions: 72937
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,193,720
Effective search space: 531205400
Effective search space used: 531205400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)