BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0233.p
         (332 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirill...   494   e-141

>gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirillum
           seropedicae SmR1]
          Length = 757

 Score =  494 bits (1272), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/320 (78%), Positives = 288/320 (90%)

Query: 4   LGAKRMKPIFLQQDAVMSDQQLRDYGALESIALDTKPRPTFIPVERRLTTLVTYRGRGGV 63
           L  +R+KPIFLQ+  V+ + QLRDYGAL  IA++T+P+P FIPVER LTTLV+YRG+GG 
Sbjct: 253 LDGRRIKPIFLQRQDVLFEGQLRDYGALAGIAVETRPQPLFIPVERHLTTLVSYRGKGGP 312

Query: 64  HGGAFRYVPAVDILKGRIPKNDLAGRVLLVGTTVPGLYDLRATPVSPNYPGVEIHANIIA 123
           +GGAFRYVPAVD+++G  P   L GR++LVGTTVPGL DLRATPV+P YPGVEIHAN+IA
Sbjct: 313 NGGAFRYVPAVDVIRGTYPHAQLDGRIMLVGTTVPGLNDLRATPVNPVYPGVEIHANLIA 372

Query: 124 SILDGDFKQRPEFAVGFDLVQILVIGLVLGLLLPLLGPLWSILLASGAAFGVGAFNFWLY 183
           SI+DGDFK RP+FAVG+DL+Q+L +G++LGLLLP+LGPLWSI+L    A G+G  NFWLY
Sbjct: 373 SIIDGDFKARPDFAVGYDLLQVLAVGVLLGLLLPMLGPLWSIVLTLATAAGLGGLNFWLY 432

Query: 184 DSAGLVLPMATALLLIAALFICNLGWGYLFEYRNRRAIVNLFGEYVAPELVAEMAANPAS 243
           DSAG+VLP+ATALLL+A+LFICNLGWGYLFEYRNR+AIVNLFGEYVAPELVAEMAANPAS
Sbjct: 433 DSAGMVLPLATALLLVASLFICNLGWGYLFEYRNRKAIVNLFGEYVAPELVAEMAANPAS 492

Query: 244 YNMEGESRELTVMFSDVRGFTTISEGLQPNELREYINAYLTAMSEDIRGNRGTLDKYIGD 303
           YNMEGE RELTVMFSDVRGFTTISE LQPNELREYIN YLTAMSEDIRGNRGTLDKYIGD
Sbjct: 493 YNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIRGNRGTLDKYIGD 552

Query: 304 AVMAFWGAPIELPDHAARAL 323
           AVMAFWGAP+ LPDHAARA+
Sbjct: 553 AVMAFWGAPLALPDHAARAV 572


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 941,392
Number of extensions: 37916
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,212,660
Effective search space: 298314360
Effective search space used: 298314360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)