BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0231.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309641|ref|YP_003773733.1| heat-shock Hsp70 protein [Herba...   317   7e-88

>gi|300309641|ref|YP_003773733.1| heat-shock Hsp70 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score =  317 bits (811), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/224 (70%), Positives = 186/224 (83%)

Query: 1   VRLSPERAKKSDRLDDILATGGVHIGGTDFDKYLSLSSVMPLLGLGSKLTSNSEVPSGYY 60
           VRLSP+RA++++R DDILA GGVHIGGTDFDKY SLS VMPLLGLG +L  N+E+PS YY
Sbjct: 194 VRLSPQRAQRAERRDDILANGGVHIGGTDFDKYFSLSCVMPLLGLGGRLQGNAEIPSSYY 253

Query: 61  FNLATWHTINLIYTRKAWQQLQDVYREVAERDKFARLLDLVEQRAGHWLALQVEAAKIGL 120
           FNLATWHTIN +YTRK WQQLQDV REVA+R++FARLLD+VEQR GHWLALQVEA KI L
Sbjct: 254 FNLATWHTINQLYTRKVWQQLQDVGREVADRERFARLLDVVEQRCGHWLALQVEAGKIAL 313

Query: 121 SAEESFTLELDRLRPPDTLQLTRAGFDASIDHLVTSVEQTVGKLLADAGVKADAIDSVFF 180
           S+ +   L+L+RLR P+ L L R  FD +++HLV SVEQTV  LL +AG+  D IDSVFF
Sbjct: 314 SSADQTLLDLERLRNPEQLSLQRRDFDLAVEHLVQSVEQTVLSLLKEAGLGPDDIDSVFF 373

Query: 181 TGGSSGVHLLRKRIAALVPSAKQVEGDLFGSIGAGLALDAVRKF 224
           TGGSSGV LLR+RI AL P A+ VEGDLFGSIG+GLA+DA RKF
Sbjct: 374 TGGSSGVRLLRERIGALAPQARHVEGDLFGSIGSGLAIDAARKF 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 728,366
Number of extensions: 30125
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)