BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0230.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309641|ref|YP_003773733.1| heat-shock Hsp70 protein [Herba...   219   1e-58

>gi|300309641|ref|YP_003773733.1| heat-shock Hsp70 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score =  219 bits (559), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 131/152 (86%), Gaps = 2/152 (1%)

Query: 56  MSDACGVDFGTSNSTMGWSRQGQPS--LLALEDGKMTLPSVVFFNADENEFSYGRAALST 113
           M++ACGVDFGTSNST+GW R   P   LL LEDGK TLPSVVFFNADEN+FSYGRA L  
Sbjct: 1   MANACGVDFGTSNSTVGWLRPDAPDSLLLPLEDGKATLPSVVFFNADENQFSYGRAGLGD 60

Query: 114 YLAGYEGRLMRSLKSLLGSGMIDGQTEVGGRALPFRALLSQFIGELKQRGERAAGRRFDS 173
           YLAGYEGRLMRSLKSLLGSG IDGQTEVGGRALP+R LLSQFIGELK R +RAAG  F S
Sbjct: 61  YLAGYEGRLMRSLKSLLGSGAIDGQTEVGGRALPYRGLLSQFIGELKMRAQRAAGTSFSS 120

Query: 174 VVLGRPVHFVDDNAEADQLAQDTLEEIARAVG 205
           VVLGRPVHFVDD+ +ADQLAQDTLE+IAR VG
Sbjct: 121 VVLGRPVHFVDDDDQADQLAQDTLEQIARDVG 152


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 672,487
Number of extensions: 26669
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)