BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0226.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ...    67   2e-13
gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra...    62   9e-12
gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans...    60   4e-11
gi|300311514|ref|YP_003775606.1| two component sensor histidine ...    60   5e-11
gi|300311800|ref|YP_003775892.1| two component heavy metal senso...    58   1e-10

>gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score = 67.4 bits (163), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 12/109 (11%)

Query: 6   ALFVLLRNLIENAVHHAPPGSAVDVDVSVR-----EVAVRDYGDGIPAEAMPQLFKRFWR 60
           AL +L  NL++NA+ + P G  VDV V +       V V+D G GI    +P++F RF+R
Sbjct: 331 ALRILFNNLVDNALRYTPAGGVVDVGVDLSTAGYCTVVVQDSGPGIAESELPRVFDRFYR 390

Query: 61  GAHRRDE-------GAGLGLSICEEIAHAHGWTLQAENAVPGARFRVVF 102
             H ++        G+GLGL+I  +IA  H   ++  N   G + RVVF
Sbjct: 391 AQHSQEGSGSRAAFGSGLGLAIVRQIADLHRVPVELRNTGHGLQARVVF 439


>gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score = 62.0 bits (149), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 3   DRGALFVLLRNLIENAVHHAPPGSAVDVDVSVRE----VAVRDYGDGIPAEAMPQLFKRF 58
           +   L  +L NLI+NA+ + P G  V V +  +     + V D G GIPAE   ++F+RF
Sbjct: 349 NEAQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERF 408

Query: 59  WRGAHRRDEGAGLGLSICEEIAHAHGWTLQAENAVPGA 96
           +R A     G+GLGL+I  EI  A   +++ +    G+
Sbjct: 409 YRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGS 446


>gi|300312679|ref|YP_003776771.1| periplasmic sensor signal
           transduction histidine kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score = 59.7 bits (143), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 9/88 (10%)

Query: 3   DRGALFVLLRNLIENAVHHAPPGSAVDV------DVSVREVAVRDYGDGIPAEAMPQLFK 56
           DR  L  L+ NLI+NAV ++PP   V V      D +V  ++V D G GI  E    +F 
Sbjct: 348 DRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATV--LSVEDSGPGIAPEHRELIFD 405

Query: 57  RFWRGAHRRDEGAGLGLSICEEIAHAHG 84
           RF+R A+ +  G+GLGL+I  EIAH HG
Sbjct: 406 RFYR-ANDKVAGSGLGLAIVREIAHDHG 432


>gi|300311514|ref|YP_003775606.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score = 59.7 bits (143), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 7   LFVLLRNLIENAVHHAPPGSAVDVDVSVREV------AVRDYGDGIPAEAMPQLFKRFWR 60
           L+  + N++ NA+ H  PG+ V +   + E+      ++ D G G+P E M  +F+ F+R
Sbjct: 354 LYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFR 413

Query: 61  GAHRRDE--GAGLGLSICEEIAHAHGWTLQAENAVPG 95
            +  +    G GLGLSI   I  AH   +QA N   G
Sbjct: 414 SSRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNG 450


>gi|300311800|ref|YP_003775892.1| two component heavy metal sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 9/83 (10%)

Query: 11  LRNLIENAVHHAPPGSAVDVDVSVRE----VAVRDYGDGIPAEAMPQLFKRFWRGAHRRD 66
           L NLI+NA+ H+P G+ + +D++ +E    VAV + G  I    +P+LF RF+R    R 
Sbjct: 364 LTNLIQNAIQHSPEGALLRIDIACQEETVRVAVSNPGKPIDEHHLPRLFDRFYRVDSARQ 423

Query: 67  E-----GAGLGLSICEEIAHAHG 84
           +     G GLGL+I + +A  HG
Sbjct: 424 DINGSHGHGLGLAIVKAVARMHG 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 318,967
Number of extensions: 11477
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 12
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 12
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)