BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0225.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311800|ref|YP_003775892.1| two component heavy metal senso...    62   4e-11
gi|300309980|ref|YP_003774072.1| two component transmembrane sen...    59   5e-10
gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ...    58   9e-10
gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance ...    57   2e-09

>gi|300311800|ref|YP_003775892.1| two component heavy metal sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 3/109 (2%)

Query: 153 EKAQKIAIASAVVAMLLFSLVVVATL---HRSLKPLRKASAAAGQIQVDNLSARLSLDDV 209
           E  +   +A++V ++L   L V+++       L PLR+ S  A       LSAR+ ++ +
Sbjct: 161 EMRRTFLLATSVFSLLGIVLAVISSYWIARAGLAPLRQMSDRAQSFSPRKLSARMPVEAM 220

Query: 210 PSELAPLFNAFNLALQRLEDGYRVQREFLATAAHELKTPLALMRGQVEL 258
           P EL+ L  AFN AL R+ED Y     F A  AHEL+TPLA + G+ ++
Sbjct: 221 PQELSVLALAFNGALDRIEDAYTQLEAFNADVAHELRTPLANLIGETQV 269


>gi|300309980|ref|YP_003774072.1| two component transmembrane sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 15/149 (10%)

Query: 139 RSERMHRIMLGSDSEKAQKIA---IASAVVAMLLFSLVVVA----TLHRSLKPLRKASAA 191
           R  R+  + +G   EK  ++A   I   ++   +   V +A     L R L PL +    
Sbjct: 48  REPRLATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQR 107

Query: 192 AGQIQVDNLSARLSLDDVPSELAPLFNAFNLALQRLEDGYRVQREFLATAAHELKTPLAL 251
               + D+LS  +    VP E++PL  + N  L RL     +Q+ F+A AAH++KTPLA 
Sbjct: 108 IRARRPDDLSP-IDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAG 166

Query: 252 MRGQVEL----DDRGDRGALLRDLDHMAR 276
           MR Q EL    DD+ D   + R L+ +A+
Sbjct: 167 MRMQSELALRQDDQVD---VRRSLEQLAK 192


>gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score = 58.2 bits (139), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 178 LHRSLKPLRKASAAAGQIQVDNLSARLSLDDV--PSELAPLFNAFNLALQRLEDGYRVQR 235
           + R L P+RKA+A   ++   ++++   L DV  P E+ PL +A N  L RL+     QR
Sbjct: 161 VSRGLAPVRKAAA---EVAARDMNSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQR 217

Query: 236 EFLATAAHELKTPLALMRGQVELDDR 261
            F+A AAHEL+TPL  +R Q +L +R
Sbjct: 218 AFVADAAHELRTPLTALRLQTQLAER 243


>gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance two
           component transmembrane sensor histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query: 183 KPLRKASAAAGQIQVDNLSARLSLDDVPSELAPLFNAFNLALQRLEDGYRVQREFLATAA 242
           +PL   S  A QI  D+LSARL  + +P+EL  +  +FN  L RLE GY    +F    A
Sbjct: 200 QPLEAMSQRAAQITPDHLSARLDQEGMPAELRRVALSFNAMLDRLEAGYAHLAQFSGDLA 259

Query: 243 HELKTPLALMRGQVEL 258
           HE++TP+ ++ GQ ++
Sbjct: 260 HEIRTPINVLMGQSQV 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 831,466
Number of extensions: 29440
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 6
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)