BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0224.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313818|ref|YP_003777910.1| two component transcription reg... 134 8e-33 gi|300313680|ref|YP_003777772.1| two component response regulato... 126 2e-30 gi|300311799|ref|YP_003775891.1| two component heavy metal respo... 124 7e-30 gi|300309981|ref|YP_003774073.1| two component response regulato... 120 9e-29 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 119 2e-28 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 134 bits (336), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 3/221 (1%) Query: 3 RIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDGLD 62 RI L+EDH ++ +AKA+ A + + A A + Y +++LD +LP DG++ Sbjct: 2 RILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGME 61 Query: 63 LVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRPVQ 122 +++++RARG TP L+LTAR L DRV+GL GADDYL KPF +EE+ ARV+AL+RR Sbjct: 62 VLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQN 121 Query: 123 LQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAWGL 182 ++++ L + + G E ++L E ++ AL+ G +V + L + L Sbjct: 122 NEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFTL 181 Query: 183 SEPVTPNALDVALHRLRRKLAAIESP--LQISNIRGHGYAL 221 + + +A+++ +HRLR+KL E P + I+ +RG GY L Sbjct: 182 EDNASMDAIEIYIHRLRKKLEH-EGPGRVGITTLRGLGYLL 221 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/217 (36%), Positives = 114/217 (52%), Gaps = 4/217 (1%) Query: 3 RIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDGLD 62 R+ L+ED + + K L G D A Y +L+LD LP DGL Sbjct: 2 RVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGLA 61 Query: 63 LVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRPVQ 122 ++R LR RG P L+ TARDA+ DRVAGL+AGADDYL KPF +EE+ AR+RAL RR Sbjct: 62 VLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQAG 121 Query: 123 LQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAWGL 182 + + + P + + V+L+A E L+ A + G + R LE +G Sbjct: 122 RAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYGW 181 Query: 183 SEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGY 219 + + NA++V +H LR+K+ + I N+RG GY Sbjct: 182 DDSIESNAVEVHIHALRKKVGSD----FIKNVRGVGY 214 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 124 bits (311), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 17/227 (7%) Query: 3 RIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDGLD 62 +I ++ED ++M+ + K L G D+ A + Y V+VLD LP DG Sbjct: 2 KILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGFS 61 Query: 63 LVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRR--- 119 ++R LR + TP +MLTARD++ DR+ GL GADDYL KPFS E++AR++AL RR Sbjct: 62 VLRALR-KVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120 Query: 120 --PVQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEA 177 P QL+ L+++ + +G + L A E L+ + R G+ + +TA+ Sbjct: 121 QEPAQLR-----IGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAE 175 Query: 178 AAWGLSEPVTPNALDVALHRLRRKLAAIESPLQ---ISNIRGHGYAL 221 W ++ N ++VA+ RLR A I++P + + +RG GY L Sbjct: 176 LVWDMNFDSNTNVVEVAIKRLR---AKIDAPFEQKLLHTVRGMGYVL 219 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 120 bits (301), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 3 RIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDGLD 62 RI L ED +A + ++L +G D A + + + +L+LD LP GL+ Sbjct: 2 RILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLE 61 Query: 63 LVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRPVQ 122 ++R+LRAR P L+LTA D++ RV GL+ GADDY+ KPF++ E+ ARVRAL RR Sbjct: 62 VLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAG 121 Query: 123 LQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTAL--EAAAW 180 L + G++ + L+A EL L+ L++ G+ V + L W Sbjct: 122 GGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEW 181 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G E V+ NA++V +HRLR+K+ ++I+ +RG GY L Sbjct: 182 G--EEVSNNAIEVYVHRLRKKIEV--GGVRIATVRGLGYCL 218 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 1/218 (0%) Query: 4 IALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDGLDL 63 I L+ED + + + L +G D T + Y +++LD LP +G D+ Sbjct: 3 ILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGWDI 62 Query: 64 VRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRPVQL 123 +R+LR R TP L LTARD + DRV GLE GADDYL KPF+ E++ARVR L+RR Sbjct: 63 LRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPSR 121 Query: 124 QSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAWGLS 183 + E+ + ++ + + + + L A E L+ L+R G+ + R + + W ++ Sbjct: 122 EVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDMN 181 Query: 184 EPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 N +DVA+ RLR KL + + G GY Sbjct: 182 FDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 647,683 Number of extensions: 24631 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 28 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)