BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0218.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 99 2e-22 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 96 2e-21 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 96 3e-21 gi|300313237|ref|YP_003777329.1| dehydrogenase [Herbaspirillum s... 92 4e-20 gi|300313632|ref|YP_003777724.1| oxidoreductase [Herbaspirillum ... 91 9e-20 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 20/246 (8%) Query: 2 STTKVALVIGGGSGMGAGVAQKLAADGF-----GIGILSSSGKGESL---GNSLGGVGVT 53 S +VALV GG G+GA ++Q+LAA G I + ++S ++L G+ + + Sbjct: 6 SGARVALVTGGAMGIGASISQQLAAKGHTVLVADINLDAASKTADALVAAGHRAAPLQMD 65 Query: 54 -GSNRSVADLKKAVDACLARWGRIDVLVNSAGHGPKGKVLELSDEEWLLGMEVYLMNVVR 112 GS S+A ++ +GR DVLVN+AG L+ E WL M V + V+ Sbjct: 66 LGSPESIAAAFAHIEK---DYGRCDVLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLL 122 Query: 113 SARLVTPLMQQQGGGAIINISSFSAVEPSQSFPTSSVFRAGLSAYTKLFADKYAPENIRM 172 + + LM +Q G I+NISS S + +A + T+ A + A I + Sbjct: 123 AGQHAARLMVKQQWGRIVNISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITV 182 Query: 173 NNILPGFIN--------SLPEKPGIKELIPMARYGKVSEVAALASHLASDAAAYITGQNI 224 N++ PG ++ S + L+PM RYG E+A+ +LA++ +AYITG I Sbjct: 183 NSVAPGPVDTPMTQAMHSEQTRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVI 242 Query: 225 RIDGGI 230 +DGG Sbjct: 243 PVDGGF 248 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 19/243 (7%) Query: 5 KVALVIGGG--SGMGAGVAQKLAADGFGIGILS-----SSGKGESLGNSLGGVGVTGSNR 57 KVA++ GG +G+G A+ +AA G I IL +G LG +G+ Sbjct: 6 KVAIITGGAGQNGLGFSTARLMAAQGARIVILDLERAEPAGAAARLGAQ--HLGLVADVT 63 Query: 58 SVADLKKAVDACLARWGRIDVLVNSAGHGPKGKVLELSDEEWLLGMEVYLMNVVRSARLV 117 A + A A L ++GRID+LVN+AG K+LE++ +++ ++V L + ++ V Sbjct: 64 DKAACEAAAAAVLKQFGRIDILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLYMSQAV 123 Query: 118 TPLMQQQGGGAIINISSFSAVEPSQSF--PTSSVFRAGLSAYTKLFADKYAPENIRMNNI 175 P MQ Q G+I+ ISS SA P S +AG+ + A ++ P+ IR+N I Sbjct: 124 LPAMQAQQSGSIVCISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCI 183 Query: 176 LPGFIN--------SLPEKPGIKELIPMARYGKVSEVAALASHLASDAAAYITGQNIRID 227 PG I+ S +K I + IP+ R G +V + LASD + Y TG + ++ Sbjct: 184 TPGLISTDINKDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVN 243 Query: 228 GGI 230 GG+ Sbjct: 244 GGM 246 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 95.5 bits (236), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 15/241 (6%) Query: 5 KVALVIGGG--SGMGAGVAQKLAADGFGIGILSSSGKGESLGNSLGG---VGVTGSNRSV 59 KVA++ GG +G+G A+ +A G + +L + + + G +G+ Sbjct: 6 KVAVITGGAGINGLGYATARLMAEQGARVVVLDLAQADPAAAAARIGSQHLGLVADVTDK 65 Query: 60 ADLKKAVDACLARWGRIDVLVNSAGHGPKGKVLELSDEEWLLGMEVYLMNVVRSARLVTP 119 A + A A L ++GRID+LVN+AG K LE++ ++ ++V L + ++ V P Sbjct: 66 ASCETAAAAILQQFGRIDILVNNAGITQPVKTLEITGADYDRILDVSLRGTLYMSQAVLP 125 Query: 120 LMQQQGGGAIINISSFSAVEPSQSF--PTSSVFRAGLSAYTKLFADKYAPENIRMNNILP 177 M+ Q G+II ISS SA P S +AG+ + A ++ PE IR+N+I P Sbjct: 126 AMRAQQNGSIICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSITP 185 Query: 178 GFINS------LPE--KPGIKELIPMARYGKVSEVAALASHLASDAAAYITGQNIRIDGG 229 G I + L E K I E IP+AR G+ ++ L SD + Y TG + ++GG Sbjct: 186 GLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLGSDLSQYCTGITLDVNGG 245 Query: 230 I 230 + Sbjct: 246 M 246 >gi|300313237|ref|YP_003777329.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 123/263 (46%), Gaps = 41/263 (15%) Query: 5 KVALVIGGGSGMGAGVAQKLAADGFGIGILS-SSGKGESLGNSLGG------VGVTGSNR 57 K A+V GG G+G VA+ LA +G + I++ S GK E + ++L + V Sbjct: 8 KAAVVTGGSLGIGRAVAEALAREGVRVAIVARSKGKLEEVASALSQSTGTEVIAVAADVS 67 Query: 58 SVADLKKAVDACLARWGRIDVLVNSAGHGPKG----KVLELSDEEWLLGMEVYLMNVVRS 113 + ++ AV +GRID+LVN A H P G ++ S E L + + ++ +R Sbjct: 68 NTEQVEAAVAQAAQHFGRIDILVNGAAH-PGGLVRSEIQHASPEGLLEDINIKVVGYMRF 126 Query: 114 ARLVTPLMQQQGGGAIINISSFSAVEPSQSFPTSSVFRAGLSAYTKLFADKYAPENIRMN 173 A+ V P M+ G G IINI + Q S + + TK +D+ P+ I +N Sbjct: 127 AKAVAPHMRAGGYGRIINIGGLTGRGSKQ---LSGMRNVAICHLTKTLSDQLGPDGITVN 183 Query: 174 NILPGFINSLPEKPGIKEL----------------------IPMARYGKVSEVAALASHL 211 I PG + E P I EL P+ R +V E+A + L Sbjct: 184 VIHPGVV----ETPHIHELYEKEAKLQGLTPEQVEQNYAKATPIRRVLQVEEIADVVLFL 239 Query: 212 ASDAAAYITGQNIRIDGGITRSL 234 AS AA ITG++I +DGGITR + Sbjct: 240 ASPRAAAITGESIAVDGGITRGI 262 >gi|300313632|ref|YP_003777724.1| oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 260 Score = 90.9 bits (224), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 119/248 (47%), Gaps = 29/248 (11%) Query: 7 ALVIGGGSGMGAGVAQKLAADGFGIGILSSSGKGESLGNSLGGVGVTGSNRSVAD-LKKA 65 A+V GG G+GA V + LA G + ++S + L S+ GV ++ S A+ + Sbjct: 12 AVVTGGTQGLGAAVVKTLAQAGARV---ATSARSLPL-QSVEGVTYVAADLSTAEGTRHF 67 Query: 66 VDACLARWGRIDVLVNSAG--HGPKGKVLELSDEEWLLGMEVYLMNVVRSARLVTPLMQQ 123 L WG +D+L+N+ G P G +SDE W + LM VR R + P M Sbjct: 68 SQTVLKDWGGVDILINALGGSKTPGGGFAAISDEHWFAEFNLNLMPAVRMDRALLPNMLA 127 Query: 124 QGGGAIINISSFSAVEP-SQSFPTSSVFRAGLSAYTKLFADKYAPENIRMNNILPGFINS 182 QG G II++SS V P +S + +A L+ Y+K A + + +R+ ++ PG+I + Sbjct: 128 QGSGVIIHVSSIQRVLPLPESTTAYAAAKAALTTYSKSLAREVTSKGVRVLSVAPGWIET 187 Query: 183 L--------------PEKPGIKEL-------IPMARYGKVSEVAALASHLASDAAAYITG 221 + G K++ IP+ R K EVA L + LAS +A ITG Sbjct: 188 EASVAFTQRTAAHAGTDYEGGKKIIMDWLGGIPVGRPAKPQEVADLIAFLASPRSASITG 247 Query: 222 QNIRIDGG 229 RIDGG Sbjct: 248 TEYRIDGG 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 646,447 Number of extensions: 24915 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 40 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)