BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0215.p (660 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitr... 927 0.0 gi|300313770|ref|YP_003777862.1| TonB-dependent siderophore rece... 71 3e-13 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 66 7e-12 >gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitrate transport protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/636 (69%), Positives = 532/636 (83%), Gaps = 3/636 (0%) Query: 27 PVCKTQVVKKEEIQSTGAVTIGDVMRRIPGVQVTDNSGTSGGAMSLNIGVRGLTGRYSPR 86 P +T VVKK+EI+STGAV+IGD MRRIPGVQ +DNSGT+G A++LNIGVRGL GRYSPR Sbjct: 69 PGART-VVKKQEIESTGAVSIGDAMRRIPGVQSSDNSGTAGSAIALNIGVRGLAGRYSPR 127 Query: 87 STILLDGIPMASAPYGQPQISFAPVSLNNIEAIDVVRGGGAVRYGPQNVGGIINFRTRSI 146 STILLDGIPMA APYGQPQ+SFAP+SLNNIE+IDVVRGGGAVR+GPQNVGGIINF+TRSI Sbjct: 128 STILLDGIPMAVAPYGQPQLSFAPLSLNNIESIDVVRGGGAVRFGPQNVGGIINFKTRSI 187 Query: 147 PTTSGISGDASLRYNSYETGGSSKQYTAFAGTTLDNGLGLAFLYSGTDGSGWRAFSNERI 206 PTT GISGDA++RYNSY GG + QYTAFAG +NG G+AFLYSG +GSGWR S+E + Sbjct: 188 PTTPGISGDAAVRYNSYGQGGGNTQYTAFAGGQAENGFGMAFLYSGQEGSGWRDKSDEHL 247 Query: 207 NDFALKFRYEISSSSEIYGKVSYYDVMSHTPGGLTVAQYNADPFQNTRKRDYWKGNRRGV 266 NDFALK RYEIS +SE+Y K++YYDV+S TPGGL+VAQY ADPFQ+TR+RD W G R+G Sbjct: 248 NDFALKMRYEISPTSELYAKINYYDVLSRTPGGLSVAQYAADPFQSTRQRDNWGGTRKGF 307 Query: 267 DFGYLNTISDTQEFEIRTYYNESYRESALIGSSTTQLTHQPRFYETTAIEPRFTQRFNLG 326 D GYLNTISD QEFEIRTY++++ R+S LI + T+L+HQPR YET IEPR+TQRF G Sbjct: 308 DVGYLNTISDRQEFEIRTYFSQATRQSTLINPAGTRLSHQPRNYETLGIEPRYTQRFAWG 367 Query: 327 SVTNDVTVGYRYIAERGHDDSYTETIATGALGVATKNRNKTDAQAAYIDDKISFGAWRIT 386 T+DVTVGYRY+ ERG D+ Y+E + TG L T+ +N TDA A YIDDKI+FG WRIT Sbjct: 368 GTTHDVTVGYRYVRERGDDNVYSEAVLTGVLSGFTQFQNSTDAHAGYIDDKIAFGKWRIT 427 Query: 387 PGVRFEHIQTTRQNIASTTKFEVTNNKPLPSLNIAYLATPELTLFTNYGTSFGVVQNTQL 446 PG+RFEH+Q+TR ++A+ ++V+NNKPLPS+N+AYL T +LTLF+NY TSFGVVQN+QL Sbjct: 428 PGLRFEHVQSTRYDVANNASYQVSNNKPLPSINVAYLLTEQLTLFSNYNTSFGVVQNSQL 487 Query: 447 SAASAPNNLAPELAKTAELGARWKSNNLSAEVTYFNIRFDNQILLI--ASPDTYQNIGKT 504 + S+ N L+PELAKT E G RWKS SAE T F+I FDNQI+ + +P ++NIGKT Sbjct: 488 NTMSSANPLSPELAKTIEGGVRWKSARASAEATVFHIDFDNQIVSVQGTNPSVFRNIGKT 547 Query: 505 KHDGIETAVDYTFGQDSLLRGLNVYANYTYTRALQESGATAGLDVPFYSRTTDTIGARYQ 564 +HDGIE A+DY F Q S+L+G +VYANYTYTRALQ+SGA G D+PFY+RTTDT+G R++ Sbjct: 548 QHDGIELAMDYAFDQQSVLKGWSVYANYTYTRALQKSGANPGKDLPFYARTTDTVGTRFK 607 Query: 565 AGPWGFNLSTTHQSRQFSLENNVIAETADGKDGEIPGYRLWNAQVDWKVPNSKGFDVVAG 624 +GPWGFNLSTTHQ RQFS E N IAE+ADG GEIPG+RLWNAQVDWKVP +KGFDV AG Sbjct: 608 SGPWGFNLSTTHQGRQFSDEANTIAESADGSIGEIPGFRLWNAQVDWKVPGTKGFDVFAG 667 Query: 625 VNNLTDRRYYSRTRDGNPGRMVGAPRTIYVQGRYAF 660 +NNLTDRRY++RT D N G++VGAPRT+YVQGRY+F Sbjct: 668 INNLTDRRYFTRTTDNNLGKLVGAPRTVYVQGRYSF 703 >gi|300313770|ref|YP_003777862.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 696 Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 139/631 (22%), Positives = 251/631 (39%), Gaps = 61/631 (9%) Query: 28 VCKTQVVKKEEIQSTGAVTIGDVMRRIPGVQVTD-NSGTSGGAMSLNIGVRGLTGRYSPR 86 + ++ + +Q + ++ + PGV +T G G +S RG G Sbjct: 75 LTSVDLIGADRLQQQQVLYNWELFAQSPGVMLTQFRQGNESGKLSF----RGFNGEGEVN 130 Query: 87 ST-ILLDGIPMASAPYGQPQI-SFAPVSLNNIEAIDVVRGGGAVRYGPQNVGGIINFRTR 144 + +L+DG+P G P + + P+ + IE VVRG RYG N+ G +N TR Sbjct: 131 AVKLLIDGVPSNDNAGGMPFLGTLFPLDMAGIE---VVRGTNDARYGLHNIAGNVNILTR 187 Query: 145 SIPTTSGISGDASLRYNSYETGGSSKQYTAFAGTTLDNGLGLAFL-YSGTDGSGWRAFSN 203 G +A L Y S+ T +Q G N FL Y +D G+R + Sbjct: 188 Q----GGNYDEARLTYGSFNT----RQVQVAKGVENGNWSQNYFLGYEKSD--GYREHAQ 237 Query: 204 ERINDFALKFRYEISSSSEIYG-KVSYYDVMSHTPGGLTVAQYNADPFQNTRKRDYWKGN 262 F+ K+ Y G + + + + PG LT A+P + GN Sbjct: 238 AENIAFSGKWFYTSDDGRYRTGLSIRHANAYAQEPGYLTAEDARANPRTSYAYAQSDGGN 297 Query: 263 RR--GVDFGYLNTISDTQEFEIRTYYNESYRESALIGSSTTQLTHQPRFYETT----AIE 316 R+ V + I D + Y N + L SSTT + Q R + T Sbjct: 298 RQLDQVSLHFDGDIDDQLAVGAKLYLNRVRDQRWLRYSSTT--SQQERLIDETHYGLMTT 355 Query: 317 PRFTQRFNLGSVTNDVTVGYRYIAERGHDDSYTETIATGALGVATKNRNKT-DAQAAYID 375 + ++ ND+ + + ER D S T++ + T D AY+ Sbjct: 356 ATYRPQWKALEGMNDLALEGGFNVERQEDQSPRFNTVNKVRVTQTRDHHFTFDTFGAYLQ 415 Query: 376 DKIS-FGAWRITPGVRFEHIQTTRQNIASTTKFEVTNNKPL--PSLNIAYLATPELTLFT 432 I +++I PG R + + + + + ++ + + + P L++ Y + +L+ Sbjct: 416 AVIKPVESFKIIPGYRVDKVGGSFSDPSRGVRYGIQDYGVIRQPKLSVVYAPIKQASLYA 475 Query: 433 NYGTSFGVVQNTQLSAASAPNNLAPELAKTAELGARWKSNN-LSAEVTYFNIRFDNQILL 491 N+G +F V + S N+L P + E G ++ L + ++ R +++ Sbjct: 476 NWGRTFQVGAGAA-AYKSNNNDLRPSINDGWESGVKFTPVEWLDGRLAWWEQRASDEVKR 534 Query: 492 IASPDT--YQNIGKTKHDGIETAVDYTFGQDSLLRGLNVYANYTYTRALQE-------SG 542 + T +N+G+TK G++ ++ G+ + + Y+R E + Sbjct: 535 RLNDPTGDSENVGRTKRSGVDLQLNLRAGKRTTMW-------LAYSRQRSEIITPDPTAP 587 Query: 543 ATAGLDVPFYSRTTDTIGARYQAGPWGFNLSTTHQSRQFSLENNVIAETADGKDGEIPGY 602 AT G ++ R + G YQA + LST+ + + + TA+ G+ GY Sbjct: 588 ATIGKEIDHVPRYLFSGGVDYQATDY-LKLSTS-----LNGQGSYYLTTAN-TGGKFGGY 640 Query: 603 RLWNAQVDWKVPNSKGFDVVAGVNNLTDRRY 633 L +A ++V + ++ V NL +R Y Sbjct: 641 TLVDASASYQVSPTLALELQ--VKNLANRYY 669 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/315 (20%), Positives = 128/315 (40%), Gaps = 41/315 (13%) Query: 363 NRNKTDAQAAYIDDKISFGA-WRITPGVRFEHIQTTRQNIASTTKFEVTNNKPLPSLNIA 421 N +K Y+ DKI+ A W++ G+R++ + +N + + E T + P + + Sbjct: 427 NYHKASNLGLYVQDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRSERTAHALSPRIGVV 486 Query: 422 YLATPELTLFTNYGTSF----GVVQNTQLSAASAPNNLAPELAKTAELGAR--WKSNNLS 475 + A P + ++ +F G V A N+L P+ ++ E G + W LS Sbjct: 487 WEALPGQHAYLSWSKNFAPVGGDVIGITPDARGNFNDLKPQFSRQVEAGIKSEWLDRRLS 546 Query: 476 AEVTYFNIR-FDNQILLIASPDTYQNIGKTKHDGIETAVDYTFGQDSLLRG--------- 525 + +F + F+ + P ++ G ++ GIE +V+ +R Sbjct: 547 TTLAWFQLELFNRNVADPVRPGFFEQSGLERNRGIELSVEGELAAPWFVRAGWAIQSAKI 606 Query: 526 LNVYANYTYTRALQESGATAGLDVPFYSRTTDTIGARYQAGPWGFNLSTTHQSRQFSLEN 585 + + RA SG L + + T+G W L T + +++ + Sbjct: 607 VQAEPKFVGKRASGVSGRGGSLFLSY----APTLG-------WFAELGLTVEGARYADRD 655 Query: 586 NVIAETADGKDGEIPGYRLWNAQVDWKVPNSKGFDVVAGVNNLTDRRYYSRTRDGNPGRM 645 N++ E+P Y W+ ++ +++ + + V NL +RRYY + G Sbjct: 656 NLL---------ELPAYTRWDGKMGYRLDEA---EFTLAVTNLANRRYYE-SATGLSQVR 702 Query: 646 VGAPRTIYVQGRYAF 660 GAPR + + Y F Sbjct: 703 PGAPRALLLTAAYKF 717 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,094,809 Number of extensions: 90075 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 4 Length of query: 660 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 569 Effective length of database: 1,188,985 Effective search space: 676532465 Effective search space used: 676532465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)