BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0210.p
         (353 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311941|ref|YP_003776033.1| formamidase [Herbaspirillum ser...   689   0.0  

>gi|300311941|ref|YP_003776033.1| formamidase [Herbaspirillum
           seropedicae SmR1]
          Length = 392

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/391 (87%), Positives = 349/391 (89%), Gaps = 39/391 (9%)

Query: 1   MQHFKIKPGVPLAEQPELGHNRWHPDLPFLSSVKPGESILIESLDFLDAQIKDTDDISDV 60
           MQHFKIKPGVPLAEQ ELGHNRWHPDLPFL+SVKPGESILIESLDFLDAQI+DTDD+SDV
Sbjct: 1   MQHFKIKPGVPLAEQAELGHNRWHPDLPFLASVKPGESILIESLDFLDAQIQDTDDVSDV 60

Query: 61  KNVDLTRAHPLTGPFHVEGAEPGDLLVIDLLDIKPVTPVGFSGVFSKENGGGFLADYFPD 120
           KNVDLTRAHPLTGPFHVEGAEPGDLLVIDLLDIKPVTPVGFSGVF+KENGGGFLADYFP+
Sbjct: 61  KNVDLTRAHPLTGPFHVEGAEPGDLLVIDLLDIKPVTPVGFSGVFAKENGGGFLADYFPE 120

Query: 121 ADKAIWDLKGLYATSRHIPGVRIAGLTHPGLMGCLPSHDLLAEWNRREAPLAAKGLAK-- 178
           ADKAIWDLKGLYATSRHIPGVRIAGLTHPGLMGCLPSHDLLAEWNRREAPLAAKGLA+  
Sbjct: 121 ADKAIWDLKGLYATSRHIPGVRIAGLTHPGLMGCLPSHDLLAEWNRREAPLAAKGLAQPP 180

Query: 179 -------------------------------------GXLSAGTRIFFPVYVKGAGFSMG 201
                                                  LSAGTRIFFPVYVKGAGFSMG
Sbjct: 181 NPSTAVLRGLTGAKFDEMAKVAARTVPPREHGGNTDIKDLSAGTRIFFPVYVKGAGFSMG 240

Query: 202 DLHFSQGDGEIGFCGAIEMDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFE 261
           DLHFSQGDGEIGFCGAIEMDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFE
Sbjct: 241 DLHFSQGDGEIGFCGAIEMDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFE 300

Query: 262 GISVENGVNYYLDATVAYRQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPN 321
           GISVENGVNYYLDATVAYRQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPN
Sbjct: 301 GISVENGVNYYLDATVAYRQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPN 360

Query: 322 CACTVSLPTSIFDQDITPKGMLNDKSYWGRK 352
           CACTV+LPTSIFDQDITPKGMLNDKSYWGRK
Sbjct: 361 CACTVALPTSIFDQDITPKGMLNDKSYWGRK 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,205,794
Number of extensions: 52153
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,212,660
Effective search space: 323780220
Effective search space used: 323780220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)