BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0209.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311942|ref|YP_003776034.1| aliphatic amidase [Herbaspirill...   636   0.0  

>gi|300311942|ref|YP_003776034.1| aliphatic amidase [Herbaspirillum
           seropedicae SmR1]
          Length = 343

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 291/328 (88%), Positives = 316/328 (96%)

Query: 1   VGVAVVNYKMPRLHTRAEVMDNVNRIAAMLIGMKQGLPGLDLVIFPEYSTHGIMYDEKEM 60
           VGVAVVNYKMPRLHTR+EV++N  +IAAML+GMKQGLPGLDLV+FPEYSTHGIMYD +EM
Sbjct: 13  VGVAVVNYKMPRLHTRSEVLENAQKIAAMLVGMKQGLPGLDLVVFPEYSTHGIMYDREEM 72

Query: 61  YDTAASIPGEETRVFSEACRIADVWGVFSLTGERHEEHPHKAPYNTLILINNQGEIVQKY 120
           ++TAA+IPG+ETR+FSEACRIA VWGVFSLTGERHEEHP K PYNTLILIN+QGEIVQKY
Sbjct: 73  FETAAAIPGDETRIFSEACRIAGVWGVFSLTGERHEEHPRKVPYNTLILINDQGEIVQKY 132

Query: 121 RKIMPWTPIEGWYPGDTTYVCDGPKGLKVSLIICDDGNYPEIWRDCAMKGAELIVRCQGY 180
           RKIMPWTPIEGWYPGD TYVCDGPKGLK+SLIICDDGNYPEIWRDCAMKGAEL+VRCQGY
Sbjct: 133 RKIMPWTPIEGWYPGDATYVCDGPKGLKISLIICDDGNYPEIWRDCAMKGAELVVRCQGY 192

Query: 181 MYPAKEQQILVSKAMAWMNNVYVAVANAAGFDGVYSYFGHSAIVGFDGRTLGECETEEMG 240
           MYPAKEQQI+VSKAMAWMNN+YVAVANAAGFDGVYSYFGHSAIVGFDGRTLGEC TEEMG
Sbjct: 193 MYPAKEQQIMVSKAMAWMNNLYVAVANAAGFDGVYSYFGHSAIVGFDGRTLGECGTEEMG 252

Query: 241 IQYAELSVGAIRDARRNWQSQNHLFKLVHRGYTGKINSGESSAGVADCPFDFYKTWVNDP 300
           IQYAELS+ AIRDARRNWQSQNHL+KL+HRGYTGKINSGES AGVA+CPFDFY+TWVNDP
Sbjct: 253 IQYAELSISAIRDARRNWQSQNHLYKLLHRGYTGKINSGESPAGVAECPFDFYRTWVNDP 312

Query: 301 QAARAQVEAITRKTAGTPECPVPGIPNE 328
           QAARAQVEA+TR +AGTPECP+PGIP E
Sbjct: 313 QAARAQVEALTRNSAGTPECPMPGIPTE 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,009,389
Number of extensions: 39053
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)