BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0208.p (229 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 421 e-119 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 213 8e-57 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 182 3e-47 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 175 3e-45 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 169 1e-43 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 421 bits (1082), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/229 (90%), Positives = 217/229 (94%) Query: 1 MFNVSHLASGYGQSAVIHDINLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRDGSIKI 60 MF VS LASGYGQS VIHD++LSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLR GSI I Sbjct: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 Query: 61 DGVELGAMESHQRVSRGVAYVPQGRMIFPGMTVLENIQTGLAADARGKVPDELYALFPVL 120 DGVELG++ESHQRV RGVAYVPQGRMIF MTVLENIQTGL A A+GKVPDELY+LFPVL Sbjct: 61 DGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAAKGKVPDELYSLFPVL 120 Query: 121 YEMRSRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIR 180 Y+MR+RKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIR Sbjct: 121 YDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIR 180 Query: 181 ELTIIVSEQVLSFTLDIADRFLVIDKGRFVYEDTRANVDAPTISKYLSV 229 LTI+VSEQVLSFTL+IADRFLVIDKGRFVYEDTR NVDAPTISKYLSV Sbjct: 181 ALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 213 bits (543), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 156/232 (67%), Gaps = 3/232 (1%) Query: 1 MFNVSHLASGYGQSAVIHDINLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRDGSIKI 60 M V+ L YG + + ++L V K ++++++GRNG+GKTTL K LMG+LP+ G++ Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 61 DGVELGAMESHQRVSRGVAYVPQGRMIFPGMTVLENIQTGLAADA---RGKVPDELYALF 117 +G ++ ++ HQR G+AYVPQGR IF +TV EN+ G+A + + E+Y LF Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 118 PVLYEMRSRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIR 177 PVL EM R+GG+LSGGQQQQLAIARAL P++++LDEPTEGIQPSIIKDI R + +R Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 178 KIRELTIIVSEQVLSFTLDIADRFLVIDKGRFVYEDTRANVDAPTISKYLSV 229 + ++ I++ EQ F ++AD F+V+ +G V T+ +D + K+L+V Sbjct: 181 QRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 182 bits (461), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 144/223 (64%), Gaps = 5/223 (2%) Query: 1 MFNVSHLASGYGQSAVIHDINLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRDGSIKI 60 + +V+ L +GYG S V+H ++L+V + EIV+++GRNG G++TL K LMG+LP R G + Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GDCRF 65 Query: 61 DGVELGAMESHQRVSRGVAYVPQGRMIFPGMTVLENIQTGLAAD---ARGKVPDELYALF 117 +G ++ + +H G+ YVP+ R +FP ++V +N+ G RG D+++ALF Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 118 PVLYEMRSRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIR 177 P LY+ R LSGG+QQ LA+ RAL NP +LL+DEPTEG+ P +++ +AR+L+E+R Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 178 KIRELTIIVSEQVLSFTLDIADRFLVIDKGRFVYEDTRANVDA 220 R + +++ EQ + L+++ R V+ +G V+E T + A Sbjct: 186 -TRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSA 227 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 136/223 (60%), Gaps = 4/223 (1%) Query: 1 MFNVSHLASGYGQSAVIHDINLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRDGSIKI 60 + V L Y + ++ ++L + E+VA+MGRNG GK+T K LMG+L R G I++ Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 DGVELGAMESHQRVSRGVAYVPQGRMIFPGMTVLENIQTGLAADARGK---VPDELYALF 117 G ++G + HQR G+ YVP+ R IF ++VLEN++TG G P L+ LF Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQALFELF 124 Query: 118 PVLYEMRSRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIR 177 P L M R GG +SGG+QQ L IAR L NPR+LLLDEP+EG+ P I++ +A ++E++ Sbjct: 125 PNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELK 184 Query: 178 KIRELTIIVSEQVLSFTLDIADRFLVIDKGRFVYEDTRANVDA 220 + + I++ EQ L F + DR ++D+GR V T A++ A Sbjct: 185 R-SGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQA 226 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 169 bits (429), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 146/233 (62%), Gaps = 5/233 (2%) Query: 1 MFNVSHLASGYGQSAVIHDINLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRDGSIKI 60 + +S L S YG+S ++H++NL+V + E+V ++GRNG G+TT +++MG++ R GSIKI Sbjct: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 Query: 61 DGVELGAMESHQRVSRGVAYVPQGRMIFPGMTVLENIQTG--LAADARGKVPDELYALFP 118 +G E + +H+ GV Y P+ R IF ++ EN+ ++ +G DE+Y +FP Sbjct: 71 NGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMFP 130 Query: 119 VLYEMRSRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRK 178 L E R+ +G LSGG+QQ LA+AR L T R+LLLDE +EG+ P I++ +AR + + K Sbjct: 131 NLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTL-K 189 Query: 179 IRELTIIVSEQVLSFTLDIADRFLVIDKGRFVYEDTRANVDAP--TISKYLSV 229 + TI++ EQ F +ADRF V++ G+ V + ++A T+++ L V Sbjct: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 608,764 Number of extensions: 22870 Number of successful extensions: 435 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 143 Length of query: 229 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 147 Effective length of database: 1,231,600 Effective search space: 181045200 Effective search space used: 181045200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)