BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0207.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t... 465 e-132 gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c... 260 1e-70 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 160 8e-41 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 156 2e-39 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 150 1e-37 >gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 465 bits (1197), Expect = e-132, Method: Compositional matrix adjust. Identities = 239/256 (93%), Positives = 248/256 (96%), Gaps = 1/256 (0%) Query: 1 MSNAPIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLD 60 MS IGFES HPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGA GKTTVLD Sbjct: 1 MSENAIGFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGA-GKTTVLD 59 Query: 61 LICGKTQATSGSIRFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR 120 LICGKT+ATSGSI+FNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR Sbjct: 60 LICGKTRATSGSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGR 119 Query: 121 KVFGALTFKRTADVVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLM 180 KVFGALTFKR+ DVVARVE+VAAEIFL++ L+TQADLLSHGQKQWLEIGMLLMQEPELLM Sbjct: 120 KVFGALTFKRSPDVVARVEAVAAEIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLM 179 Query: 181 LDEPVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM 240 LDEPVAGMSVSEREKTA+LLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM Sbjct: 180 LDEPVAGMSVSEREKTAELLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSM 239 Query: 241 DKVQSDPKVIDVYLGH 256 +KVQSDPKVIDVYLGH Sbjct: 240 EKVQSDPKVIDVYLGH 255 >gi|300313998|ref|YP_003778090.1| urea transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 260 bits (664), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/254 (51%), Positives = 185/254 (72%), Gaps = 4/254 (1%) Query: 5 PIGFESTDHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLICG 64 P G ++T +L +E++TVSFDGFKA++ LNL + E+R +IGPNGA GKTT++D+I G Sbjct: 36 PEGVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGA-GKTTMMDVITG 94 Query: 65 KTQATSGSIRFNNH-ELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVF 123 KT+ TSG+ F +LTKM+E+ I G+GRKFQ P+++E +VFENLE++ ++V Sbjct: 95 KTRPTSGTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVK 154 Query: 124 GALTFKRTADVVARVESVAAEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLMLDE 183 L + +++ + ++E + I L+ A LLSHGQKQWLEIGMLLMQEP+LL+LDE Sbjct: 155 TTLFARLSSEQIGKIEEILKLIRLNGQEQRVAGLLSHGQKQWLEIGMLLMQEPQLLLLDE 214 Query: 184 PVAGMSVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAH--KVTVLHQGKILAEGSMD 241 PVAGMS +E +TA+LL + S++V+EHDM FV+ IA KVTVLH+G +LAEG+M Sbjct: 215 PVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVTVLHEGSVLAEGNMR 274 Query: 242 KVQSDPKVIDVYLG 255 +VQS+ +VI+VYLG Sbjct: 275 QVQSNERVIEVYLG 288 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 160 bits (406), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 144/245 (58%), Gaps = 7/245 (2%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLICGKTQATSGSIR 74 +L +LT F GF AV +NL ++R + +IGPNGA GKTT +L+ TSG I Sbjct: 5 ILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGA-GKTTCFNLLTKFLVPTSGQIL 63 Query: 75 FNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALTFKRTADV 134 FN ++T + I R G+ R FQ +++ ++SV EN+ + R K+ + F + + Sbjct: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQR--KLGTSFHFWKNGES 121 Query: 135 VARVESVAAEIF----LDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMSV 190 + +++ A ++ L +T L +G+K+ LEI L EPEL++LDEP GM Sbjct: 122 LKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGH 181 Query: 191 SEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMDKVQSDPKVI 250 + ++ L+ ++S GR+++++EH+M + I +++VL +G +LAEGS ++V +P+V+ Sbjct: 182 EDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVM 241 Query: 251 DVYLG 255 + Y+G Sbjct: 242 EAYMG 246 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 156/250 (62%), Gaps = 11/250 (4%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLICGKTQATSGSIR 74 +L + D++ +F G + + +N V++ E+ +IGPNGA GKTTV +LI G +A+SGSIR Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGA-GKTTVFNLITGLLRASSGSIR 60 Query: 75 FNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENL------EMSFPRGRKVFGALTF 128 FN+ ++ ++ H I G+ R FQ +++ +++ EN+ +++ + F Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 129 KRTADVVARVESVA--AEIFLDQHLYTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVA 186 R A+ AR ++ + + LD + AD LS+G+++ LE L +P+LL+LDEPVA Sbjct: 121 -RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVA 179 Query: 187 GMSVSER-EKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMDKVQS 245 GM+ +E+ E ++++ +G ++ +IEHDM FV + ++ VL+ GKI+AEG+ D++++ Sbjct: 180 GMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKN 239 Query: 246 DPKVIDVYLG 255 + +VI+ YLG Sbjct: 240 NQEVIEAYLG 249 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 141/247 (57%), Gaps = 6/247 (2%) Query: 13 HPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAAGKTTVLDLICGKTQATSGS 72 P+L ++T + F AV+ + L ++ V VIGPNGA GKTT+ + G T T GS Sbjct: 3 RPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGA-GKTTLFHTLTGTTPITEGS 61 Query: 73 IRFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGALTFKRTA 132 I E+ + + V+ G+ R FQ S++ NLSV ENL ++ +GR AL + A Sbjct: 62 ILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLA-AQGRAPLAALNPWKRA 120 Query: 133 DVVARVESVAAEIFLDQHLYTQADL----LSHGQKQWLEIGMLLMQEPELLMLDEPVAGM 188 + + ++A E+ L A LSHGQ++ LE+GM + P+++ LDEP +GM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 189 SVSEREKTAQLLGRISQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMDKVQSDPK 248 + + + QL+ + + +VV+IEH+MD V I+ ++TV+ G+ILA+G +++SD + Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 249 VIDVYLG 255 V YLG Sbjct: 241 VRRAYLG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 684,130 Number of extensions: 24051 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 111 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 116 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)