BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0205.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC t... 557 e-160 gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [... 212 4e-56 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 102 5e-23 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 95 7e-21 gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 95 8e-21 >gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 557 bits (1436), Expect = e-160, Method: Compositional matrix adjust. Identities = 279/293 (95%), Positives = 288/293 (98%) Query: 13 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQ 72 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAP+LQ Sbjct: 1 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ 60 Query: 73 PFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 132 PFYFF A+VLSF VAYG GYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE Sbjct: 61 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 120 Query: 133 VSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRV 192 VSATLPDWL+GSFKPT++IDIP+NGLFMM LT+LLTG IF+LLFRSRWGLQVRATMQNRV Sbjct: 121 VSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV 180 Query: 193 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 252 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS Sbjct: 181 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 240 Query: 253 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVRVRK 305 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSV+VRK Sbjct: 241 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK 293 >gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 538 Score = 212 bits (539), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 130/306 (42%), Positives = 183/306 (59%), Gaps = 2/306 (0%) Query: 1 MVSLSEFFAI--FAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITY 58 + +L AI FA + F G+S+ VLLL ALGLAI FG MG+INMAHGE L IGAY TY Sbjct: 230 LAALDRHLAIVDFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTY 289 Query: 59 LLSHLTTTYAPSLQPFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSL 118 + + + P Y A+ +FIVA G E L+I LY RPL+TLL TWG+SL Sbjct: 290 VCQLVFRKFFPGAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISL 349 Query: 119 AMQQTFRSIFGAKEVSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRS 178 + Q RSIFGA+ V P W+ G ++ + N + ++ L + ++++L ++ Sbjct: 350 MLMQGVRSIFGAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKT 409 Query: 179 RWGLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYI 238 R GL VRA QNR M+ VG++T K+D TF LGCG+AG+ G A + +G+ GP G YI Sbjct: 410 RLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYI 469 Query: 239 VDTFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGL 298 VD+F+VVV GG L GT+ +AF + + E +AK+ L +I+ + RPQGL Sbjct: 470 VDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGL 529 Query: 299 FSVRVR 304 F+++ R Sbjct: 530 FALKGR 535 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 102 bits (253), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 19/278 (6%) Query: 27 LMALGLAIIFGQMGVINMAHGEFLTIGAYITYL-LSHLTTTYAPSLQPFYFFGAVVLSFI 85 +++LGLA+IFG + VIN AHG +GA++ ++ LS+L Y L +++ I Sbjct: 27 MLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVML---------IVAPI 77 Query: 86 VAYGFGYLTELLLISRLYK-RPLDTLLATWGLSLAMQQTFRSIFGAKEVSATLPDWLLGS 144 + FG + E ++ LYK L LL T+G++L ++ FRSI+G ++PD L G+ Sbjct: 78 LVGAFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQGA 137 Query: 145 FKPTENID---IPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRVMSGAVGINT 201 N+ +P +++V +L++ + ++ ++R G +RA +N + A GIN Sbjct: 138 ----TNLGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINV 193 Query: 202 RKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTIASAF 261 + T+ G +A AG + P GS I+ F VVV GG S++G+I + Sbjct: 194 PLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGL 253 Query: 262 SIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLF 299 + + F A V+ + I +LM+RP GLF Sbjct: 254 VLGLIEGLTRVFYPELSATVVFIIMAI-VLMVRPAGLF 290 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 95.1 bits (235), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 151/312 (48%), Gaps = 28/312 (8%) Query: 4 LSEFFAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHL 63 ++E Q NGLS+ + L+A+G +++G +G+IN AHGE I +Y+ L Sbjct: 1 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYV-----GL 55 Query: 64 TTTYAPSLQPFY-----FFGAVVLSFIVAYGFGYLTELLLISRLYKRPLD------TLLA 112 T A +Q Y GA+++S +V +G+ E R+ RPL L++ Sbjct: 56 VTLTAIGVQSGYPLPLLLGGALIVSVLVTGLYGWTVE-----RVAYRPLRGGPRLVPLIS 110 Query: 113 TWGLSLAMQQTFRSIFGAKEVSATLPDWLLGSFKPTENID----IPINGLFMMVLTLLLT 168 G+S+ +Q + GA+++S +P + G+ + D IP + + ++ +TL+L Sbjct: 111 AIGMSIFLQNYVQIGQGARDMS--VPVLISGALEFQMGSDFTVTIPYSRMVIVGVTLVLM 168 Query: 169 GTIFILLFRSRWGLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFT-TIG 227 + + + RSR G RA ++ M+ +GI+T KV TF LG +A V G TIG Sbjct: 169 VALTLFIARSRMGRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIG 228 Query: 228 STGPTSGSLYIVDTFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAV 287 P G + + F V GG S+ G + + ++ A +L V++ + Sbjct: 229 KLNPYIGFIAGIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLL 288 Query: 288 ILILMLRPQGLF 299 +LIL+ RP GL Sbjct: 289 VLILLFRPTGLL 300 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 94.7 bits (234), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 11/288 (3%) Query: 16 FNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQPFY 75 F+G++ +L L+++GL++ G M IN+AHG F +G Y+ L L P Sbjct: 10 FDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTL--LNGMGVP------ 61 Query: 76 FFGAVVLSFIVAYGFGYLTELLLISRLYK-RPLDTLLATWGLSLAMQQTFRSIFGAKEVS 134 F + L+FI A G + E L RLYK LD +L + GL+ +G + Sbjct: 62 FLATLPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQP 121 Query: 135 ATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRVMS 194 LPDWL G +++ +F++ + +++T + +L+ R+R+G Q+RA++ N+V + Sbjct: 122 VVLPDWLRGQIS-LLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA 180 Query: 195 GAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLI 254 +GIN +V TFALG G+AG+ G + PT Y+V LVV GGA ++ Sbjct: 181 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK 240 Query: 255 GTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVR 302 G + +A + ++++ + + ++++L+L P GL R Sbjct: 241 GPLLAALILGVFDVAGKYYVP-EIGAFVIYGLMVVLLILFPAGLMRRR 287 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 714,922 Number of extensions: 24765 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 19 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)