BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0201.p (1030 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 1747 0.0 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 171 4e-43 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 164 3e-41 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 162 1e-40 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 155 1e-38 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 1747 bits (4524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 856/1001 (85%), Positives = 920/1001 (91%) Query: 1 LTNPAIQRIVKVRRDYNTWVANETLEDYALRYTPRSFRRWSEFRLANTALGATSFLALEA 60 +T+PA QRIVKVRRDYNTWVANETLEDYALRYTP SFRRWSEFRLANTALGATSFLALEA Sbjct: 1 MTHPATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEA 60 Query: 61 ISGAITLSYGFTNTFWAIACVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTVT 120 ISGAITLSYGFTN FWAIACVV+LFFLTGLPI YYAARYGVDMDLLTRGAGFGYIGST+T Sbjct: 61 ISGAITLSYGFTNAFWAIACVVLLFFLTGLPICYYAARYGVDMDLLTRGAGFGYIGSTIT 120 Query: 121 SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIVIPMVAYGITLINRLQMWT 180 SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCS+I+IPMVAYGITLINRLQMWT Sbjct: 121 SLIYASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSIIIIPMVAYGITLINRLQMWT 180 Query: 181 QPLWIVLLTLPYICVLYKEPDALTNLITFSGRAEEGGSFNIYLFGAAATVAFSLIAQIGE 240 QPLW+VLL LPY+CVLYKEPDAL+NL++F+GRAEEG SFN+ LFGAAATVAFSLIAQ+GE Sbjct: 181 QPLWLVLLVLPYVCVLYKEPDALSNLMSFAGRAEEGSSFNLTLFGAAATVAFSLIAQVGE 240 Query: 241 QVDFLRFLPEKTQANRGRWWTALLLAGPGWILLGGAKMLGGALLAFLAVQHEVPMGKAVE 300 QVDFLRFLP+KT ANRGRWW+ALLLAGPGWILLGGAKMLGGALLAFLA+QHEVPM +AVE Sbjct: 241 QVDFLRFLPQKTPANRGRWWSALLLAGPGWILLGGAKMLGGALLAFLAIQHEVPMARAVE 300 Query: 301 PTQMYLIGYQYVFSNPALVLAAVALFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR 360 PTQMYL+GYQYVF NPAL L AV LFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR Sbjct: 301 PTQMYLVGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR 360 Query: 361 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVSDLVINKPLKLSPAHIEF 420 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVV+DLVINKPL+LSPAHIEF Sbjct: 361 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHIEF 420 Query: 421 KRAHLYDINPVGVGSMAIASILSAIAMSGVLGKLAAAMSPFIALGTAMLMAPLIAIATRS 480 KRAHLYD+NPVGVG+MAIA++LS +AMSGVLGK AAM+PFIALGTA+ APLIA+AT S Sbjct: 421 KRAHLYDVNPVGVGAMAIATLLSTLAMSGVLGKTVAAMAPFIALGTALASAPLIALATGS 480 Query: 481 RYYIARKDTLPEHLHTGKNSDHQHAALECVICGNQFEMPDMAHCPAYQGAICSLCCSLDA 540 RYYIAR+DTL E + L C ICGN FE PDMAHCPAYQGAICSLCCSLDA Sbjct: 481 RYYIARRDTLAEQNYRPVTPGQAQPVLACAICGNAFETPDMAHCPAYQGAICSLCCSLDA 540 Query: 541 RCNDRCKTPAARLPNQVFSTLQALLPSRFTLKLNTRIGHYLIVFGLLSGGLAVVLWMLYF 600 RC DRCKTP ARLPNQ+ TL+ L+P+RF +KLNTRIGHYL VFGLL+GGLAVVLWMLYF Sbjct: 541 RCKDRCKTPRARLPNQILHTLRQLIPARFAVKLNTRIGHYLSVFGLLAGGLAVVLWMLYF 600 Query: 601 QQMAGISGLTPSGPDSIQSIFIKLFCTLLVLIGVGSWWLILTNESRSVAHEESERQTNLL 660 QQMA +SG P S++S+FIKLFC LLV++GVG+WWL+LTNESR+VA EESERQTNLL Sbjct: 601 QQMADLSGSGLDAPASLRSVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTNLL 660 Query: 661 LQEIEAHKQTDAELQRAKEAAESANLAKSRFVTGMSHELRTPLNSILGYAQILHVDATIP 720 LQEIEAHKQTDAELQRAKEAAESANLAKSRFV GMSHELRTPLNSILGYAQILHVDATIP Sbjct: 661 LQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP 720 Query: 721 PARKDAIAVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALWEFLEQIAGMFAPQAE 780 PARKDAI VIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELAL FLEQI GMFAPQAE Sbjct: 721 PARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAE 780 Query: 781 QKGLSFRFEKTGRIPHIVHADQKRLRQILINLLGNAVKFTDSGSVTVRVRYLREIAYFDI 840 QKGL FRF+K+GR+P IVHADQKRLRQILINLLGNAVKFTD G VT+R+RY REIAYFD+ Sbjct: 781 QKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIAYFDV 840 Query: 841 IDTGIGIADDDLERIFLPFERSNAANLREDIGTGLGLAISSMLTHIMGGELAVKSKVGSG 900 IDTGIGIADDD ERIFLPFERS+AANLREDIGTGLGLAIS ML HIMGGEL+V+S+VG G Sbjct: 841 IDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQG 900 Query: 901 SSFHLKIYLPEVHVPRPRLKLEDQMSGYIGPSKRVLVVDDQASQRLLLKEMLLPLGFEVV 960 SSFHLKIYLPEVHVPRPR+KLEDQMSGY GPS+ +LVVDDQASQR LLK+ML+PLGF V Sbjct: 901 SSFHLKIYLPEVHVPRPRIKLEDQMSGYAGPSRHILVVDDQASQRRLLKDMLMPLGFTVS 960 Query: 961 EADGGIACLEELARGIPDLVLLDIAMPLMDGWSVARAXPGR 1001 EAD G+AC+E L +PDLVLLDIAMP MDGWSVARA R Sbjct: 961 EADSGLACMETLGHALPDLVLLDIAMPQMDGWSVARAIRAR 1001 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 205/394 (52%), Gaps = 59/394 (14%) Query: 654 ERQTNLL-LQEIEAHKQTDAELQRAKEAAESANLAKSRFVTGMSHELRTPLNSILGYAQI 712 E QT LL LQ+ + K +++A E E AN KS F+ MSHELRTPLNS L A++ Sbjct: 441 EEQTQLLELQKDDLAKTQVVLVEKATEL-ERANQYKSEFLANMSHELRTPLNSTLILAKL 499 Query: 713 L--HVDATIPPARKDAIAVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALWEFLEQ 770 L + + + I +G LL+LI+ +LD++K+EAGK+ + + L + ++ Sbjct: 500 LADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADE 559 Query: 771 IAGMFAPQAEQKGLSFRFEKTGRIPHIVHADQKRLRQILINLLGNAVKFTDSGSVTVRVR 830 ++ FA A+QKGL F+ E +P + D +RL QIL NLL NA+KFT+ G V++R+ Sbjct: 560 LSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRI- 618 Query: 831 YLR---EIAYFDIIDTGIGIADDDLERIFLPFERSNAANLREDIGTGLGLAISSMLTHIM 887 Y IA F + DTGIGI +D + IF F +++ + R+ GTGLGL+IS L H++ Sbjct: 619 YPDAGGRIA-FAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLL 677 Query: 888 GGELAVKSKVGSGSSFHLKI----------------------------------YLPEVH 913 GG++ V S++G GS F L + P+V Sbjct: 678 GGDIRVTSRLGEGSIFTLSLPPLYSSEQAVSNTAPEPTPAAAAAASTLQAAHVATAPDVR 737 Query: 914 VPR----------PRLKLEDQMSGYIGPSKRVLVVDDQASQRLLLKEMLLPLGFEVV--- 960 + R + ++D S+ +LV++D A+ ++L+++ +GF+ V Sbjct: 738 INRTPAAAAPQRLQEISIDDDRDRIETSSRLILVIEDDAAFAMILRDLAREMGFQCVVTH 797 Query: 961 EADGGIACLEELARGIPDLVLLDIAMPLMDGWSV 994 A+ G+A E+ R P +L+D+ +P G V Sbjct: 798 SANEGVAAA-EMYR--PSAILMDMNLPDFSGLGV 828 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 117/377 (31%), Positives = 190/377 (50%), Gaps = 52/377 (13%) Query: 667 HKQTDAEL-QRAKEAAESANLAKSRFVTGMSHELRTPLNSILGYAQILHVDATIPPARKD 725 ++ DA L R KE A+ AN AKS F+ +SHE+RTP+N ILG +++L +++ + ++D Sbjct: 326 RREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELL-MESGLSSKQRD 384 Query: 726 AIAVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALWEFLEQIAGMFAPQAEQKGLS 785 I + L+ +I+ +LD +KIE+GK+ L +++++ ++ P ++K + Sbjct: 385 YADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQ 444 Query: 786 FRFEKTGRIPHIVHADQKRLRQILINLLGNAVKFTDSGSVTVRVRYLREIA-------YF 838 F V D RL+Q+L NLL NA+KFT +G V + + ++ + +F Sbjct: 445 FDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFF 504 Query: 839 DIIDTGIGIADDDLERIFLPFERSNAANLREDIGTGLGLAISSMLTHIMGGELAVKSKVG 898 I DTGIGI+ + L+++F PF +++++ R GTGLGLAIS L +MGG +A +S G Sbjct: 505 AITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPG 564 Query: 899 SGSSFHLKIYLPEVHVPRPR------------------------------LKLEDQ---- 924 + F +I PE P P L D Sbjct: 565 ESTRFSFEILCPEASTPAPEPVSEAAAPAPATALATTAPALPPAAEAPGTLMPPDNAPQP 624 Query: 925 -----MSGYIGPS----KRVLVVDDQASQRLLLKEMLLPLGFEVVEADGGIACLEELARG 975 S + PS R+L+ +D R LL+ +L G + E + G+ +E + G Sbjct: 625 PSNVDASATVLPSLLAGARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTG 684 Query: 976 IPDLVLLDIAMPLMDGW 992 DLVL+D MP+MDG+ Sbjct: 685 HYDLVLMDCMMPIMDGY 701 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 156/256 (60%), Gaps = 6/256 (2%) Query: 660 LLQEIEAHKQTDAELQRAKEAAESANLAKSRFVTGMSHELRTPLNSILGYAQILHVDATI 719 LL+ + + +T +L +AKEAA+ A L + F++ MSHE+RTP+N++LG A +L + Sbjct: 59 LLRLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLR-STRL 117 Query: 720 PPARKDAIAVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALWEFLEQIAGMFAPQA 779 + + I S LL +++ +LD +KI+ GKM +A E L + +E A + +A Sbjct: 118 DTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKA 177 Query: 780 EQKGLSFRFEKTGRIPHIVHADQKRLRQILINLLGNAVKFTDSGSVTVRVRYLREIA--- 836 +K + R+P + D R+RQIL+NLLGNA+KFT +G V +RV+ L+ + Sbjct: 178 REKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHC 237 Query: 837 --YFDIIDTGIGIADDDLERIFLPFERSNAANLREDIGTGLGLAISSMLTHIMGGELAVK 894 F++ D+GIG+ +D L R+F PF +++++ R+ GTGLGL+I L +MGG + V+ Sbjct: 238 RVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVE 297 Query: 895 SKVGSGSSFHLKIYLP 910 S +G+GS F ++ +P Sbjct: 298 SALGTGSCFWFELGIP 313 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 189/363 (52%), Gaps = 44/363 (12%) Query: 677 AKEAAESANLAKSRFVTGMSHELRTPLNSILGYAQILHVDATIP-PARKDAIAVIRRSGE 735 A+ AE AN AKS F+ +SHE+RTP+N +LG Q+L T P PA++D + S + Sbjct: 886 ARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQ--RTQPLPAQQDYLDKAEISAK 943 Query: 736 HLLSLIDGLLDIAKIEAGKMRLASDELALWEFLEQIAGMFAPQAEQKGLSFRFEKTGRIP 795 LL+L++ LLD +K++A +++L L F +A + A Q G+S ++P Sbjct: 944 SLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLP 1003 Query: 796 HIVHADQKRLRQILINLLGNAVKFTDSGSVTVRVRYL-----REIA-YFDIIDTGIGIAD 849 + D RL+Q+L+NL GNA+KFT G + V L R +A ++ DTGIGIA Sbjct: 1004 RRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAA 1063 Query: 850 DDLERIFLPFERSNAANLREDIGTGLGLAISSMLTHIMGGELAVKSKVGSGSS--FHLKI 907 D L+ IF F ++ A+ R GTGLGLAIS L +MGG+L V S+ G GS F L++ Sbjct: 1064 DRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDLQL 1123 Query: 908 YLPEVHV-----------PRPRLKLEDQMSGYIGPSK-------------RVLVVDDQAS 943 + + V P+P L+ +G P ++L+V+D Sbjct: 1124 AVDDDSVLGPAAADDAARPQP-LQAASHTAGSRAPETARSAPDAQCLQGVQILLVEDNPV 1182 Query: 944 QRLLLKEMLLPLGFEVVEADGG-----IACLEELARGIPDLVLLDIAMPLMDGWSVARAX 998 R + E+L G +V AD G +AC + AR DLVL+D+ MP MDG R Sbjct: 1183 NRQVASELLALSGAQVTCADSGSMGVAMAC--DPARHF-DLVLMDLQMPGMDGIEATRRI 1239 Query: 999 PGR 1001 G+ Sbjct: 1240 RGQ 1242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,975,564 Number of extensions: 121189 Number of successful extensions: 696 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 655 Number of HSP's successfully gapped: 38 Length of query: 1030 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 935 Effective length of database: 1,170,045 Effective search space: 1093992075 Effective search space used: 1093992075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 135 (56.6 bits)