BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0196.p (250 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 131 5e-32 gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transpo... 129 3e-31 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 108 5e-25 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 102 3e-23 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 101 5e-23 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 131 bits (329), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 13/211 (6%) Query: 15 YLLWMWHGFQTTLLLSAATVVLATLLGFFLAAARSSAHPGLRVPAAAYTSLFRNTPLLVQ 74 YL W+ G T+ L + +LA +LG FL R+ + L AA Y LFRN PLLVQ Sbjct: 20 YLDWLLSGLGVTVALGLSAWILALVLGTFLGILRTLPNRALSGFAACYVELFRNVPLLVQ 79 Query: 75 LLFWYFGVPGLFPEGAMEWLNAAHSIRFLGVLTLSWPSFEFLAAMIGVVLYSTAYVSEEI 134 + WYF +P L P G +++ L +T +F+ AM+ + +++ A V E++ Sbjct: 80 IFIWYFAMPELLPWG--------DAVKALPPMTQ-----QFVMAMLCLGMFTAARVCEQV 126 Query: 135 RAGMRGVPATQSLAGAAIGLTRLQVVRYIVLPQAVRIALPPLLGQYMNILKNTSLTMAIG 194 R+G+ +P Q AG A+GLT Q +++LP A+RI LPPL +++NI KN+++ IG Sbjct: 127 RSGIESLPRGQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKNSAVASTIG 186 Query: 195 LAELSYTSRQVEAETFRTFQAFGFATLLYIV 225 L EL+ RQ+ T + ++AF TL Y++ Sbjct: 187 LLELAAQGRQLVDYTAQPYEAFIAVTLAYML 217 >gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 249 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 115/204 (56%), Gaps = 13/204 (6%) Query: 22 GFQTTLLLSAATVVLATLLGFFLAAARSSAHPGLRVPAAAYTSLFRNTPLLVQLLFWYFG 81 G + TL +A ++A +LG R++ P + A Y LFRN PLLVQ+ WYF Sbjct: 27 GLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRIANGYVELFRNIPLLVQMFLWYFV 86 Query: 82 VPGLFPEGAMEWLNAAHSIRFLGVLTLSWPSFEFLAAMIGVVLYSTAYVSEEIRAGMRGV 141 +P L P +W+ S P F+ A + + ++++ V+ ++ G++ + Sbjct: 87 MPELLPAFIGDWIK-------------SLPDASFVTATLALGFFTSSRVAVQVTTGIQAL 133 Query: 142 PATQSLAGAAIGLTRLQVVRYIVLPQAVRIALPPLLGQYMNILKNTSLTMAIGLAELSYT 201 P Q +AGAA+GLT +Q RY++LP A RI +P L ++ I+KN+S+ + IGL EL+ Sbjct: 134 PRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAA 193 Query: 202 SRQVEAETFRTFQAFGFATLLYIV 225 + + TF+TF+A AT++Y++ Sbjct: 194 TYSMREFTFQTFEALTGATIIYVI 217 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 108 bits (269), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 24/224 (10%) Query: 21 HGFQTTLLLSAATVVLATLLGFFLAAARSSAHPGLRVPAAAYTSLFRNTPLLVQLLFWYF 80 G TLL + A+++ +LGF LA AR + PAA Y S+ R TPLLVQ+ Y+ Sbjct: 18 KGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVVYY 77 Query: 81 GVPGLFPEGAMEWLNAAHSIRFLGVLTLSWPSFEFLAAMIGVVLYSTAYVSEEIRAGMRG 140 G+PG+ E S GVLTLS L ++AY+SE +R + G Sbjct: 78 GLPGMGIE---------FSPLTAGVLTLS--------------LNASAYLSESLRGAILG 114 Query: 141 VPATQSLAGAAIGLTRLQVVRYIVLPQAVRIALPPLLGQYMNILKNTSLTMAIGLAELSY 200 V Q A ++GLT Q +RYI++PQAVRIA+P + ++++K+TSL I + EL Sbjct: 115 VTRGQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELML 174 Query: 201 TSRQVEAETFRTFQAFGFATLLYIVAIALIESVGHWHLQARLAH 244 +++V A TFR + A +Y + E++ H L+ +L Sbjct: 175 ATKEVIAVTFRPLPLYVAAAAIYWMLSLCFEALQH-RLEKKLGK 217 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 102 bits (254), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 23/200 (11%) Query: 26 TLLLSAATVVLATLLGFFLAAARSSAHPGLRVPAAAYTSLFRNTPLLVQLLFWYFGVPGL 85 TLLLSA + + GF +A R+S LR+ +A Y + + TP+L+ L ++G Sbjct: 20 TLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLSFYG---- 75 Query: 86 FPEGAMEWLNAAHSIRFLGVLTLSWPSFEFLAAMIGVVLYSTAYVSEEIRAGMRGVPATQ 145 L + P +AA I + +YS+AY+ E R + VP Q Sbjct: 76 -----------------LAIFGYKLP--PMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQ 116 Query: 146 SLAGAAIGLTRLQVVRYIVLPQAVRIALPPLLGQYMNILKNTSLTMAIGLAELSYTSRQV 205 A A+ +TR Q +RY++LPQAVRI+LPP +G + I+KNTS+ IGL EL+ + V Sbjct: 117 WEASTALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLV 176 Query: 206 EAETFRTFQAFGFATLLYIV 225 TF+ F F +Y V Sbjct: 177 SNATFQPFLVFPIVAGIYFV 196 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 101 bits (252), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 35/244 (14%) Query: 2 LSHFDTSQLLAPKYLLWMWHGFQTTLLLSAATVVLATLLGFFLAAARSSAHPGLRVPAAA 61 LS FD + ++ G TT+ L A VL +G F A AR+ L+ + Sbjct: 8 LSTFDYTDVIV--------KGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSG 59 Query: 62 YTSLFRNTPLLVQLLFWYFGVPGLFPEGAMEWLNAAHSIRFLGVLTLSWPSFEFLAAMIG 121 Y + RNTP LVQL F +FG+P +L E AA++ Sbjct: 60 YVEIIRNTPFLVQLFFIFFGLP-----------------------SLDIHISEITAAIVA 96 Query: 122 VVLYSTAYVSEEIRAGMRGVPATQSLAGAAIGLTRLQVVRYIVLPQAVRIALPPLLGQYM 181 +V+ AY +E IRAG++ +P Q A ++ ++R+Q+ R+I+L A++ P L Q + Sbjct: 97 MVINLGAYSTEIIRAGVQAIPRGQIEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVV 156 Query: 182 NILKNTSLTMAIGLAELSYTSRQVEAETFRTFQAFGFATLLYIVAIALIESV----GHWH 237 ++ +++ I + ELS+ + ++ FR F+A+ AT +Y+V L+ V GH+ Sbjct: 157 IVMLGSAVCSQIAVEELSFAANFIQGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYF 216 Query: 238 LQAR 241 + AR Sbjct: 217 ITAR 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 730,440 Number of extensions: 27694 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 19 Length of query: 250 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 167 Effective length of database: 1,226,865 Effective search space: 204886455 Effective search space used: 204886455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)