BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0195.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 95 8e-21 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 94 1e-20 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 92 4e-20 gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 82 3e-17 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 82 4e-17 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 94.7 bits (234), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 103/189 (54%), Gaps = 2/189 (1%) Query: 25 GAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRKLLTLALGFFRAIPVLMLIFWTYFL 84 G TLL ++ S L +LG V V + + + + R P+L+ IF Y+ Sbjct: 19 GVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVVYYG 78 Query: 85 LPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAGIRSGQWDAGLSLGLPRLHVLRWI 144 LP GI+ + + + LSL ++AYL+ S+ I G+ GQW+A S+GL LR+I Sbjct: 79 LP-GMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYI 137 Query: 145 VLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSFVASQVNSRLMIYPMEIFMFVGAI 204 ++PQA+++ +PS N ++LIKD+SL ++ V EL +V + + P+ +++ AI Sbjct: 138 IVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIA-VTFRPLPLYVAAAAI 196 Query: 205 YFVLCSALE 213 Y++L E Sbjct: 197 YWMLSLCFE 205 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 2/202 (0%) Query: 23 LGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRKLLTLALGFFRAIPVLMLIFWTY 82 L A TLLLS + L + G + ++ +R L + + + PVL+L+F ++ Sbjct: 14 LEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLSF 73 Query: 83 FLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAGIRSGQWDAGLSLGLPRLHVLR 142 + L I FG +P +++ A+++ S+AYL I + QW+A +L + R LR Sbjct: 74 YGLAI-FGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTALAMTRWQQLR 132 Query: 143 WIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSFVASQVNSRLMIYPMEIFMFVG 202 +++LPQA+++ LP V V ++K++S+A I+G+ EL+ A ++ S P +F V Sbjct: 133 YVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELA-QAGKLVSNATFQPFLVFPIVA 191 Query: 203 AIYFVLCSALEQFAAWVGRYFH 224 IYFV C L +FA + R +H Sbjct: 192 GIYFVFCYPLSRFAFALERKYH 213 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 122/221 (55%), Gaps = 20/221 (9%) Query: 2 EFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRKL 61 +F+V+ D+LP LL G A +T+L++ + L+G++ G++ A + ++ + Sbjct: 4 DFSVITDSLPALLEG---------AKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGI 54 Query: 62 LTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAG 121 + F R P+++ + + YF LP+ GI V + + + ++ + S AY+A V Sbjct: 55 GFGYVEFVRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLS 114 Query: 122 IRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSF 181 + G +AGL+LGLP VL +++ P A++ M+P+ NQ++ +KD+SL ++GVGEL+ Sbjct: 115 VPRGLREAGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIGVGELTR 174 Query: 182 VASQV---NSRLMIYPMEIFMFVGAIYF----VLCSALEQF 215 ++ N R +EI++ V AIY V+ AL F Sbjct: 175 QGQEIMAANFR----AVEIWIAVAAIYLCMIGVMTYALRTF 211 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 10/197 (5%) Query: 33 SIGSALLSALLGVVFG------VVLAMSS--GAVRKLLTLALGFFRAIPVLMLIFWTYFL 84 SIG L+ + L V G V+LA S +R+ L + + IP+L+L+F YF Sbjct: 16 SIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIPLLILLFIVYFG 75 Query: 85 LPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAGIRSGQWDAGLSLGLPRLHVLRWI 144 L + +G+ +P +++ A+ + ++AYL + + QW+A L L R LR + Sbjct: 76 LSV-YGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLV 134 Query: 145 VLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSFVASQVNSRLMIYPMEIFMFVGAI 204 ++PQA ++ LP + V LIK +SLA ++G EL+ A Q+ + + P +F+ VG+ Sbjct: 135 IIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELT-RAGQIINNSIFQPFLVFLLVGSF 193 Query: 205 YFVLCSALEQFAAWVGR 221 YF+LC L +++A + R Sbjct: 194 YFLLCYPLSRWSASMER 210 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 18/198 (9%) Query: 30 LLLSIGSALLSALLGVVFGVVLAMSSGAVRKLLT-LALGF---FRAIPVLMLIFWTYFLL 85 LL+S+ L++ + G+V+G +LAM + L A G+ FR+IP++M++ W + ++ Sbjct: 22 LLVSLKITLVAIVFGMVWGTLLAMMRLSRHSPLQWFAAGYVNLFRSIPLVMVLLWFFLIV 81 Query: 86 P----IAFGIDVPGVL---SVMFALSLVSAAYLAHSVAAGIAGIRSGQWDAGLSLGLPRL 138 P FG+ L S + A +L AAY A + AGI + GQ A +LGL Sbjct: 82 PQLLQKLFGLSPANDLRMTSALVAFALFEAAYYAEIIRAGINSVSRGQMAAAYALGLTYP 141 Query: 139 HVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGEL---SFVASQVNSRLMIYPM 195 + ++LPQA + M+P + Q + L +D+SL Y+ + + ++ + N R+ + Sbjct: 142 QAMGMVILPQAFRNMVPLLLTQGIVLFQDTSLVYVSALADFFGRAYSIGERNGRI----I 197 Query: 196 EIFMFVGAIYFVLCSALE 213 E+ GA+YF++C ++ Sbjct: 198 EMLFVAGAVYFIICFSMS 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 787,191 Number of extensions: 30506 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 19 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)