BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0189.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313481|ref|YP_003777573.1| isoleucine patch superfamily ac...    72   3e-14
gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her...    63   1e-11

>gi|300313481|ref|YP_003777573.1| isoleucine patch superfamily
           acetyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score = 72.0 bits (175), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 53  IGKQVDDGFNLIPPFHTTGGTDIAIGRNVFINQNCTIYDLGGVHIGDDVMIGPNVSIITS 112
           IG++   G N+        G D+ IG NV +  N +IYD   V + DDV  GP++     
Sbjct: 35  IGERCSFGQNVFV------GNDVLIGNNVKVQNNVSIYD--AVTLEDDVFCGPSMVFTNV 86

Query: 113 GHPLEPSRRRDCVVAKPIRIEKNVWIGAGATIIGGVTVGENAVVGAGSVVTRDVPPDTLV 172
            +P     R+     +   + +   IGA ATI+ G  +GE A +GAG+VVTRDVP   L+
Sbjct: 87  NNPRSAVSRKH--EYRRTLVRRGASIGANATIVCGHEIGEYAFIGAGAVVTRDVPAYALM 144

Query: 173 GGNPARVI 180
            G PAR I
Sbjct: 145 VGTPARRI 152


>gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 10/121 (8%)

Query: 77  IGRNVFINQNCTIYDLGGVHIGDDVMIGPNVSIITSGHPLEPSRRRDCVVAKPIRIEKNV 136
           IGR VFI+         GV IG+  ++G + S I  G  L  +         P  + + V
Sbjct: 74  IGRRVFIDHGM------GVVIGETAIVGDD-STIYQGVTLGGTSLVKGAKRHPT-LGRGV 125

Query: 137 WIGAGATIIGGVTVGENAVVGAGSVVTRDVPPDTLVGGNPARVIR--SIASEKRRAAASV 194
            IGAGA ++GG TVG+ A VG+ +VVT++VP  T   GNPAR+I   ++++E  +AAA +
Sbjct: 126 IIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGTTAVGNPARIIERNTVSAEPDQAAARL 185

Query: 195 F 195
           F
Sbjct: 186 F 186


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 597,871
Number of extensions: 22446
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)