BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0183.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309412|ref|YP_003773504.1| drug/metabolite transporter (DM...   234   4e-63

>gi|300309412|ref|YP_003773504.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  234 bits (598), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 179/265 (67%), Gaps = 7/265 (2%)

Query: 16  HASWNALLRGGADRLWSMTVMCLAVALASLAIALFLAPPAQASWMYAVLSAVLHVGYNLF 75
           HASWNALL+   DRL S+ +M L   + ++ + L+   P  ASW Y +LS +LH GYNLF
Sbjct: 16  HASWNALLKSSHDRLASLALMTLGAGIGAIPLILWRPWPEPASWFYIILSGLLHTGYNLF 75

Query: 76  LVRSYRAGDLGQTYPISRGSSPLLITIAASAFAGERVAMSALLGIALVAGGIISLA---- 131
           L+R+YR GD GQ+YPI+RGSSPLL+ + A+ FAGE++ +  ++GI LV+ GI+SLA    
Sbjct: 76  LIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGLYTVIGILLVSLGIVSLADLRA 135

Query: 132 -FNGRKLAVPSLPYALGTGCFIAAYSVVDGIGVRLSGAPMAYTVWMCALWGVLMPAVYIG 190
             +   LA P   +A  TG FIAAY++ DGIG RL+G  M+Y  W+  L  + +  +Y  
Sbjct: 136 MRSREHLAGPLAAFA--TGAFIAAYTITDGIGARLAGDAMSYAGWLFVLDSIALAVIYQR 193

Query: 191 LRGANHLFTMRPGFSTAFMGGLVSLLAYGIVIYAMSGAPMGAVSALRETSVLFAALIGYF 250
             G   +   R    T   GG++SLLAYGIVI+A++ APMG VSALRETSVLFA LIG  
Sbjct: 194 RHGRWPIALGRRETWTGLGGGVMSLLAYGIVIWAVTLAPMGMVSALRETSVLFALLIGAL 253

Query: 251 FLGETLTVRKMLACAVIAAGTIIIG 275
           FLGE LT+R++L+  VI AGTI++G
Sbjct: 254 FLGERLTLRRVLSGVVIVAGTIVLG 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 873,666
Number of extensions: 37665
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)