BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0182.p (320 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314051|ref|YP_003778143.1| transcription regulator protein... 165 4e-42 gi|300309845|ref|YP_003773937.1| LysR family transcription regul... 154 7e-39 gi|300313122|ref|YP_003777214.1| transcription regulator protein... 153 2e-38 gi|300309577|ref|YP_003773669.1| transcription regulator protein... 145 3e-36 gi|300312645|ref|YP_003776737.1| LysR family transcription regul... 145 4e-36 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 165 bits (418), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 160/295 (54%), Gaps = 7/295 (2%) Query: 20 MRDLPPTATLRAFEAATRHATFTSASEELHVTQSAVSHQLKHLEELWGLQLFQR-GKSLA 78 +R LP A LRAF+AA R+ F+ A+EE+HVT A+SHQ++ LEE GLQLF R GK ++ Sbjct: 4 LRKLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRIS 63 Query: 79 LTPAGAALAPIVREFFMNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHP 138 +T G A +R+ + LR Q + RL +STT SFA +WL PRL HP Sbjct: 64 ITETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHP 123 Query: 139 EILVTLETTDKAIHFSSTEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTP- 197 E+ V L++ DV +RFG GNY GL SE + + +PVA+P + Sbjct: 124 ELEVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKL 183 Query: 198 RKPAELLCYPLLTRAGADLVPKWALWFQQVGVSMSALKESVRFADTNMTIEAALLGQGIA 257 +PA+L LL D W W + G+ + + D+++T+ A G+G+A Sbjct: 184 ARPADLAHCSLLR---VDSRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVA 240 Query: 258 LARSGHVEAEISDGSLVRLFKAPFPSPVAYYFV-CPKGTESQPHVVSFRDWLLAE 311 LAR EIS G LVRLF PS A+YFV P+ E +P V +F++W+ E Sbjct: 241 LARHVIASQEISTGELVRLFDVVVPSEDAHYFVHLPEALE-KPGVAAFKEWIFEE 294 >gi|300309845|ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 154 bits (390), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 155/295 (52%), Gaps = 6/295 (2%) Query: 23 LPPTATLRAFEAATRHATFTSASEELHVTQSAVSHQLKHLEELWGLQLFQRG-KSLALTP 81 +PP +L AFEA R +F A+ ELH+T SA+SHQ+ LE+L GL+LF+R K + LTP Sbjct: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 Query: 82 AGAALAPIVREFFMNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEIL 141 AG + V + + DLR L++ ++ SFA WL+PR+ ++ HP+I Sbjct: 62 AGQSYLNRVAGALGAINSATDDLRHGVEN-SLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 Query: 142 VTLETTDKAIHFSSTEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPA 201 + L + + F + D+ IR G ++P L E + E++ P+ASPD LAR P Sbjct: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRI-DTPD 179 Query: 202 ELLCYPLLTRAGADLVPKWALWFQQVGVSMSALKESVRFADTNMTIEAALLGQGIALARS 261 +L+ PL+ G+ L +W WF + + + ++RF M+IEAA+ G G+ Sbjct: 180 DLVLAPLIQSRGSLL--QWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESD 237 Query: 262 GHVEAEISDGSLVRLFKAPFPSPVA-YYFVCPKGTESQPHVVSFRDWLLAESSEA 315 ++ G L +F + +Y VCP +S+P V+ F WL ES A Sbjct: 238 AFGAVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESGAA 292 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/292 (36%), Positives = 148/292 (50%), Gaps = 13/292 (4%) Query: 23 LPPTATLRAFEAATRHATFTSASEELHVTQSAVSHQLKHLEELWGLQLFQR-GKSLALTP 81 LPP L AFEAA RH +F A+EEL +T SA+SH+++ LEE G +LF R G+S+ L+ Sbjct: 5 LPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSIGLSE 64 Query: 82 AGAALAPIVREFFMNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEIL 141 G +VR L R + ++KV +FA L+PR+ ++ HPEI+ Sbjct: 65 FGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRHPEIV 124 Query: 142 VTLETTDKAIHFSSTEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPA 201 V L + S +E DV IRFG GNYP + +E +F E F VASP L L + PA Sbjct: 125 VELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPMKSPA 184 Query: 202 ELLCYPLLTRAGADLVPKWALWFQQVG----VSMSALKESVRFADTNMTIEAALLGQGIA 257 +L LL A + W WF+ G V SA +R D + +EA G G+ Sbjct: 185 DLKQATLLRSA----LEPWQPWFEAAGLKDWVEPSA---GLRVDDLGLLLEAVRHGYGVG 237 Query: 258 LARSGHVEAEISDGSLVRLFKAPFPSPV-AYYFVCPKGTESQPHVVSFRDWL 308 L R E ++ G +V LF +P AYY V + +P V +F W+ Sbjct: 238 LTRQHFAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWM 289 >gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 5/297 (1%) Query: 19 KMRDLPPTATLRAFEAATRHATFTSASEELHVTQSAVSHQLKHLEELWGLQLFQRG-KSL 77 ++ LPP +L AFEAA RH +FT A+ ELH+TQSA+S Q+ LE G +LF R ++L Sbjct: 2 RISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRAL 61 Query: 78 ALTPAGAALAPIVREFFMNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLH 137 LT +G A +V+ ++ D+ ++KG L V+ + A+ WL PRL H Sbjct: 62 RLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRARH 121 Query: 138 PEILVTLETTDKAIHFSSTEPDVAIRF-GNGNYPGLHSEFMFREQIFPVASPDLLARLGT 196 P+ + L D S T+ D+ I F +G GL + ++ E++FPV SP L G Sbjct: 122 PDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLD--GR 179 Query: 197 PRKPAELLCYPLLT-RAGADLVPKWALWFQQVGVSMSALKESVRFADTNMTIEAALLGQG 255 P +L LLT G W W G+ ++ + + ++ A+ GQG Sbjct: 180 LLAPEDLRHQTLLTLEDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPVLLQLAMEGQG 239 Query: 256 IALARSGHVEAEISDGSLVRLFKAPFPSPVAYYFVCPKGTESQPHVVSFRDWLLAES 312 + LA ++A + G LVR +A YY V P+ +FR WL+AES Sbjct: 240 VVLAWRHMIDACMEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAES 296 >gi|300312645|ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 145 bits (366), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 146/288 (50%), Gaps = 15/288 (5%) Query: 25 PTATLRAFEAATRHATFTSASEELHVTQSAVSHQLKHLEELWGLQLFQR-GKSLALTPAG 83 P LRAFE + RH +FT A+EEL VTQ+AVS Q+K+LE+ G+ LF+R + LALT G Sbjct: 4 PLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEG 63 Query: 84 AALAPIVREFFMNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEILVT 143 AL P+V + F + L + + R L V +FA+ WL+PRL + HP + + Sbjct: 64 LALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVDLR 123 Query: 144 LETTDKAIHFSSTEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPAEL 203 L T + + + D AIRFG+G + G +E +F + P+ +P + ARL R PA+L Sbjct: 124 LLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARL---RSPADL 180 Query: 204 LCYPLLTRAGADLVPKWALWFQQVGVSMSALKESVRFADTNMTIEAALLGQGIALARSGH 263 LL +D +W WF G + L+ V F + EAA G+AL Sbjct: 181 GAETLLRSYRSD---EWGRWFAAAGAACPPLRGFV-FDSSLALAEAAAQEAGVALLPVLM 236 Query: 264 VEAEISDGSLVRLFKAPFPSPV---AYYFVCPKGTESQPHVVSFRDWL 308 E E+ G LV PF + AY+ K + +FR WL Sbjct: 237 FERELQQGRLV----CPFGQRIVLGAYWLTSLKSRPQTAAMAAFRQWL 280 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 959,084 Number of extensions: 38001 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 38 Length of query: 320 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 235 Effective length of database: 1,217,395 Effective search space: 286087825 Effective search space used: 286087825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)