BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0180.p (205 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313164|ref|YP_003777256.1| LysR family transcription regul... 90 1e-19 gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 82 4e-17 gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 79 3e-16 gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 78 5e-16 gi|300309393|ref|YP_003773485.1| LysR family transcription regul... 71 6e-14 >gi|300313164|ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 3/175 (1%) Query: 15 TRLKMRHLLLLLQIRQYKSLTRVAEHMASTQPAITNALSELEGMFGGALFDRSARGMAPT 74 +RL+ R + LL + + SL + AE M TQPA T AL E+E G LFDRS RG+ T Sbjct: 28 SRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEAT 87 Query: 75 ELGKVVLERAGAMVHDLRHLVRDIETLTSGHAGHLHIGITPFISGQLLTSAIQRTRPDGD 134 ELG+ V+ A + D+ +L +++ + SG G L IG T + +T A+ R R + Sbjct: 88 ELGRCVIRYARLIQSDVANLRDELQNMISGRGGRLAIG-TIMGAAPFVTRALSRLR-EIQ 145 Query: 135 QRLTVTIHEGTSDQLLAQLSDHALDLVIGRASSGVNLENIRFEVLYRQQPRLIAS 189 +++ I E TS + L L +DL+IGR+S +E+L R +P I S Sbjct: 146 PEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEML-RGEPMCIVS 199 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 81.6 bits (200), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 1 MEVFDANALLRRLSTRLKMRHLLLLLQIRQYKSLTRVAEHMASTQPAITNALSELEGMFG 60 M+ D N LR RLK R LLLL+ + +++ R A + TQPA + L +LE M G Sbjct: 1 MKNSDPNWFLR---ARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLG 57 Query: 61 GALFDRSARGMAPTELGKVVLERAGAMVHDLRHLVRDIETLTSGHAGHLHIG--ITPFIS 118 ALF+R RGM PT G+ ++ A + L DI L SG +G + +G ++P ++ Sbjct: 58 VALFERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMA 117 Query: 119 GQLLTSAIQRTRPDGDQRLTVTIHEGTSDQLLAQLSDHALDLVIGR 164 LL AI R + L + + +S+ LL++L LD +IGR Sbjct: 118 --LLPPAIARVKEQAPM-LRIGVEVESSNILLSRLLHGELDFIIGR 160 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 7/183 (3%) Query: 10 LRRLSTRLKMRHLLLLLQIRQYKSLTRVAEHMASTQPAITNALSELEGMFGGALFDRSAR 69 L L +RL+M+ L LL+ + ++KSL + + +A TQ A + +L+ELE M LF+R+ Sbjct: 17 LNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKS 76 Query: 70 GMAPTELGKVVLERAGAMVHDLRHLVRDIETLTSGHAGHLHIGITPFISGQLLTSAI--- 126 G+ G V+ A M DL L ++ + SG G L IG L+ A+ Sbjct: 77 GLIANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPALIVPAVDAL 136 Query: 127 QRTRPDGDQRLTVTIHEGTSDQLLAQLSDHALDLVIGRASSGVNLENIRFEVLYRQQPRL 186 QR P L++ I E TS +L L + LDL++ RAS + ++ L + + Sbjct: 137 QRRHP----ALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSEEPLSV 192 Query: 187 IAS 189 + S Sbjct: 193 VVS 195 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 2/141 (1%) Query: 26 LQIRQYKSLTRVAEHMASTQPAITNALSELEGMFGGALFDRSARGMAPTELGKVVLERAG 85 + + + SL + AE +A TQP + AL E+E G LF R+ RG+ PTELG V+ A Sbjct: 24 IALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLFTRTNRGLEPTELGHCVIRYAR 83 Query: 86 AMVHDLRHLVRDIETLTSGHAGHLHIGITPFISGQLLTSAIQRTRPDGDQRLTVTIHEGT 145 + DL HL ++ + GH G L +G T + LLT A+ R + L+V I E T Sbjct: 84 LIQTDLTHLREEMLAIMQGHGGRLAVG-TIMGAVPLLTDALTRLL-EAHPALSVEIVEDT 141 Query: 146 SDQLLAQLSDHALDLVIGRAS 166 S +LL L LDL I R S Sbjct: 142 SARLLRLLDQGRLDLAICRTS 162 >gi|300309393|ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 17 LKMRHLLLLLQIRQYKSLTRVAEHMASTQPAITNALSELEGMFGGALFDRSARGMAPTEL 76 +++RHL L + + +S TR AE + QP ++ + LE GGALF RS++G+ +E+ Sbjct: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKALEEEVGGALFLRSSQGVELSEV 60 Query: 77 GKVVLERAGAMVHDLRHLVRDIETLTSGHAGHLHIGIT-PFISGQLLTSAIQRTRPDGDQ 135 G+V+L A V +R SG G L +G T + L++ A+Q+ R + + Sbjct: 61 GRVLLPHAQRAVDQAEQALRAARQAASGETGLLRMGFTSSAVFHPLVSHALQQFR-ERHR 119 Query: 136 RLTVTIHEGTSDQLLAQLSDHALDLVIGR 164 +L +++ EG ++QLLA ++ LD R Sbjct: 120 KLEISLSEGITEQLLADIAASQLDAAFVR 148 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 526,155 Number of extensions: 20452 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 15 Length of query: 205 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 124 Effective length of database: 1,236,335 Effective search space: 153305540 Effective search space used: 153305540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)