BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0179.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312657|ref|YP_003776749.1| NADP-dependent malic enzyme oxi...   329   1e-91
gi|300310478|ref|YP_003774570.1| NADP-dependent malic enzyme oxi...   284   4e-78

>gi|300312657|ref|YP_003776749.1| NADP-dependent malic enzyme
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 770

 Score =  329 bits (843), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 157/188 (83%), Positives = 170/188 (90%)

Query: 6   RQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFRYTARGN 65
           RQAALDYHEFPTPGKI V  +K L  QRDL+LAY+PGVAAACEEIVADPLNAFRYTARGN
Sbjct: 16  RQAALDYHEFPTPGKIAVTPTKLLTNQRDLSLAYSPGVAAACEEIVADPLNAFRYTARGN 75

Query: 66  LVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVTIIAG 125
           LV VI+NGTAVLGLGNIGALASKPVMEGK VLFKKFAGIDVFDIE+NETDPDKL+ +IA 
Sbjct: 76  LVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGIDVFDIEVNETDPDKLIDVIAA 135

Query: 126 LEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLKVVKKDI 185
           LE TFGGINLEDIKAPECF +ER+LR++MKIPVFHDDQHGTAI V AA +NGLKVV KDI
Sbjct: 136 LEPTFGGINLEDIKAPECFYIERKLREKMKIPVFHDDQHGTAIIVGAAILNGLKVVGKDI 195

Query: 186 TEVKVVVS 193
             VK+VVS
Sbjct: 196 KNVKLVVS 203


>gi|300310478|ref|YP_003774570.1| NADP-dependent malic enzyme
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  284 bits (726), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 137/191 (71%), Positives = 155/191 (81%)

Query: 6   RQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFRYTARGN 65
           R AA +YH  P+ GKI V  +KPL  QRDL+LAY+PGVA  C +I ADPL AF YT+RGN
Sbjct: 13  RDAAREYHRTPSRGKIEVRPTKPLSNQRDLSLAYSPGVAYPCLDIEADPLKAFDYTSRGN 72

Query: 66  LVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVTIIAG 125
           LV VI+NGTAVLGLGNIG LASKPVMEGK  LFKKFAG+DVFDIE+ E DPDKLV IIA 
Sbjct: 73  LVAVISNGTAVLGLGNIGPLASKPVMEGKGCLFKKFAGVDVFDIELAENDPDKLVEIIAS 132

Query: 126 LEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLKVVKKDI 185
           LE T GGINLEDIKAPECF +E++L  RM IPVFHDDQHGTAI  SAA +NGL++V KDI
Sbjct: 133 LEPTLGGINLEDIKAPECFYIEQKLSARMNIPVFHDDQHGTAIISSAALLNGLELVGKDI 192

Query: 186 TEVKVVVSGAG 196
            +VK+ VSGAG
Sbjct: 193 GKVKIAVSGAG 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,224
Number of extensions: 24367
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)