BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0173.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313112|ref|YP_003777204.1| TRAP-type C4-dicarboxylate tran...    75   2e-15
gi|300310441|ref|YP_003774533.1| TRAP-type C4-dicarboxylate tran...    69   1e-13
gi|300309847|ref|YP_003773939.1| TRAP-type C4-dicarboxylate tran...    69   1e-13

>gi|300313112|ref|YP_003777204.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 344

 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 28  AQFRMKCANIMPADHPLNVRLTEASARIREQTNGQVDISIFPSSQLGTDADMLSQVRAGQ 87
           A+F  K AN +P  HP+N R  E +A I EQ+ G++++ ++P++QLGTD DMLSQVRAG 
Sbjct: 36  AEFTFKYANNLPVTHPMNARAKEMAAAIAEQSKGRIELQLYPNNQLGTDTDMLSQVRAG- 94

Query: 88  XARSTFLSSPVL 99
            A   F  SP++
Sbjct: 95  -AIDFFTLSPLI 105


>gi|300310441|ref|YP_003774533.1| TRAP-type C4-dicarboxylate
          transport system periplasmic protein [Herbaspirillum
          seropedicae SmR1]
          Length = 348

 Score = 69.3 bits (168), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%)

Query: 8  AGAAGASMAALAFPSLVWGQAQFRMKCANIMPADHPLNVRLTEASARIREQTNGQVDISI 67
          AGA GA++   +  S     A+F  K A      HP+N R  +A  RIRE T G++DI +
Sbjct: 21 AGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREATGGRLDIKL 80

Query: 68 FPSSQLGTDADMLSQVRAG 86
          FP++QLG+D D++SQ+R G
Sbjct: 81 FPANQLGSDTDLMSQIRNG 99


>gi|300309847|ref|YP_003773939.1| TRAP-type C4-dicarboxylate
          transport system periplasmic protein [Herbaspirillum
          seropedicae SmR1]
          Length = 345

 Score = 68.9 bits (167), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 49/79 (62%)

Query: 8  AGAAGASMAALAFPSLVWGQAQFRMKCANIMPADHPLNVRLTEASARIREQTNGQVDISI 67
          AGA GA++   +  S     A+F  K A      HP+N R  EA  RIR  TNG+++I +
Sbjct: 18 AGAVGAALPLFSILSRPASAAEFSYKFATGQDPSHPVNKRAQEAIDRIRNATNGRLEIKL 77

Query: 68 FPSSQLGTDADMLSQVRAG 86
          FP++QLG+D D++SQVR G
Sbjct: 78 FPANQLGSDTDLMSQVRNG 96


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.128    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 359,788
Number of extensions: 12054
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)