BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0167.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309878|ref|YP_003773970.1| 2-polyprenyl-6-methoxyphenol hy...    85   1e-17
gi|300313232|ref|YP_003777324.1| 3-(3-hydroxyphenyl) propionate ...    80   2e-16
gi|300310882|ref|YP_003774974.1| 2-polyprenyl-6-methoxyphenol hy...    75   8e-15

>gi|300309878|ref|YP_003773970.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 589

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 4   RAVVADVSLQGS-SRDVWHRFSGGTQERQIALCPLAGTDLFQLQAALAEDEEPDLSAEGL 62
           R ++ADV +      + W  F      +Q  L      D++++   L  D +P       
Sbjct: 210 RFLIADVKMDAPFPAERWFWFDPPFHPQQSVLLHRQPDDVWRIDFQLGWDADP------- 262

Query: 63  TSMVLERTGRADIPVV----------AVHWASAFQMHARLAQRYRVGRVLLAGDAAHVHP 112
              VLE+T    IP V          ++ W S +       +R+R GRVL  GDAAH   
Sbjct: 263 ---VLEKTPERVIPRVRALLGEEVSFSLEWVSVYTFSCVRMERFRHGRVLFVGDAAHCVS 319

Query: 113 PTGGQGLNTSVQDAYNLAWKLAAVLAG-ADETLLDTYEEERRPIAESMLGLSTR 165
           P G +G N+ +QDA NLAWKLA VL G A ++LLD+Y  ER   A+  L  STR
Sbjct: 320 PFGARGANSGIQDAENLAWKLAHVLQGKAPDSLLDSYASEREYAADENLLNSTR 373


>gi|300313232|ref|YP_003777324.1| 3-(3-hydroxyphenyl) propionate
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 131/303 (43%), Gaps = 46/303 (15%)

Query: 51  EDEEPDLSAEGLTSMVLERTGRADIPVVAVHWASAFQMHARLAQRYRVGRVLLAGDAAHV 110
           ED E  L+ E +  ++ E     D+  + +  A  +  ++R+A     GR+ LAGDAAH+
Sbjct: 244 EDGEQMLAPEKVRELLREHV--RDVDALNIIRARVYTHNSRVAGSLVCGRICLAGDAAHI 301

Query: 111 HPPTGGQGLNTSVQDAYNLAWKLAAVLAG-ADETLLDTYEEERRPIAESMLGLS------ 163
            PP  GQGLN  ++DA+NLAWKLA VL G     LL +Y EER    ++M+ L+      
Sbjct: 302 TPPWIGQGLNAGLRDAFNLAWKLAWVLQGRMKPELLASYHEERHAHVKAMIDLADLFGAV 361

Query: 164 ----TRLLEEAKRGEMRRGREVQQ-----LDLGYP-----GSSLALETSVREHGPRAGDR 209
                RLL   +       +++ +     L + +       S   ++  VR      G  
Sbjct: 362 LSQKNRLLAWCRDKFFLAIKDIPRVRDYVLQMKFKPMPSFSSQAVMQDDVRNRSDLVGRM 421

Query: 210 APDAPVATLPGTPLRLFDLFRGTHWTLIGFHVPLLHSLEA---KGMQVH----------- 255
              + V    G  +RL DL  G  + L+ +   +L + E      MQ             
Sbjct: 422 FLQSLVENGAGEVMRLDDLC-GGRFVLLSWRCDVLAAAEPGLRSRMQAFGCDYLQGVRSR 480

Query: 256 -------LFGPGGNLVDCDGHFHDAYGLQRGEWMLVRPDGYIGAI-VAADHLESLKDYLQ 307
                  L G G  + D +   +  +  +  +W+L+RPD +I A   A D  E +  YL 
Sbjct: 481 SGPRGQVLAGAGVVIQDYENKLNAWFKEKGVDWVLLRPDRFIAAAGRAGDAPEVVARYLD 540

Query: 308 RVG 310
           +V 
Sbjct: 541 QVA 543


>gi|300310882|ref|YP_003774974.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 104/264 (39%), Gaps = 41/264 (15%)

Query: 80  VHWASAFQMHARLAQRYRVGRVLLAGDAAHVHPPTGGQGLNTSVQDAYNLAWKLAAVLAG 139
           + W S +Q   R   + R  RVL AGDAAH   P G +G NT VQD  NL WKL  V+ G
Sbjct: 282 LEWVSVYQFACRRIDKMRYQRVLFAGDAAHQVSPFGARGANTGVQDIDNLVWKLKLVIDG 341

Query: 140 -ADETLLDTYEEERRPIAESMLGLSTRLL-----------------------EEAKRGEM 175
            A  + +D+Y EER   A+  L  STR                         EE  R  +
Sbjct: 342 KAPPSFIDSYHEERAWAADDNLRQSTRSTDFITPKSRASKALRDAVLGLAETEEFARTLV 401

Query: 176 RRGREVQQLDLGYPGSSLALETSVREHGPRAGDRAPDAPVATLP----GTPLRLFDLFRG 231
             GR      L  P S +    +  +     G  AP    A  P    G P  L +   G
Sbjct: 402 NSGR------LSTPTSYVHSPLNTADAALFGGRMAPGTVCADAPVLREGQPGWLLESL-G 454

Query: 232 THWTLIGFHVPLLHS-LEAKGMQVHLF-----GPGGNLVDCDGHFHDAYGLQRGEWMLVR 285
             + ++ F      + +EA G+   +      G G  L+D +G     Y    G   LVR
Sbjct: 455 AGFVVLFFGASAPQAVIEAAGISARVVTVGAPGSGAELIDREGLAALRYAASEGCVYLVR 514

Query: 286 PDGYIGAIVAADHLESLKDYLQRV 309
           PD ++ A     H + +   L R 
Sbjct: 515 PDQHVAARWNRFHSDDIAAALARC 538


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,698
Number of extensions: 56560
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)