BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0159.p (117 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 203 3e-54 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 177 2e-46 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 100 5e-23 gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 75 1e-15 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 72 8e-15 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 203 bits (517), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 100/106 (94%), Positives = 103/106 (97%) Query: 12 RRGGGILGGPHYSAAKAGVLGLARAMAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKA 71 +RGGGILGGPHYSAAKAGVLGLARAMAREFGP+GIRVNSI PGLIGTDIIKGKLTEEKKA Sbjct: 144 QRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSITPGLIGTDIIKGKLTEEKKA 203 Query: 72 DIAETIPLARLGRADDIGGACVFLASDLSLYCTGITLDVNGGMLIH 117 +IAETIPLARLGRADDIGGACVFL SDLS YCTGITLDVNGGMLIH Sbjct: 204 EIAETIPLARLGRADDIGGACVFLGSDLSQYCTGITLDVNGGMLIH 249 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 177 bits (449), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 87/106 (82%), Positives = 93/106 (87%) Query: 12 RRGGGILGGPHYSAAKAGVLGLARAMAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKA 71 +RGGGILGGPHYSAAKAGVLGLARAMAREFGP GIRVN I PGLI TDI K L+ EKKA Sbjct: 144 QRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLISTDINKDILSAEKKA 203 Query: 72 DIAETIPLARLGRADDIGGACVFLASDLSLYCTGITLDVNGGMLIH 117 +IA+TIPL RLG DD+GG CVFLASDLS YCTG+TLDVNGGMLIH Sbjct: 204 EIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGMLIH 249 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 99.8 bits (247), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 51/98 (52%), Positives = 67/98 (68%), Gaps = 1/98 (1%) Query: 19 GGPHYSAAKAGVLGLARAMAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKADIAETIP 78 G +Y+AAKAGV G++RA+ARE G I VN +APG I TD+ + L E++ A I + IP Sbjct: 154 GQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTDMTRA-LNEQQSAAILQQIP 212 Query: 79 LARLGRADDIGGACVFLASDLSLYCTGITLDVNGGMLI 116 L RLG A++I A FLAS + Y TG TL+VNGGM + Sbjct: 213 LGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGMYM 250 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 75.5 bits (184), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 12 RRGGGILGGPHYSAAKAGVLGLARAMAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKA 71 R GGG G Y+A+K V L R MA+E D IRVN++APG+I T + T E+ Sbjct: 148 RHGGG-PGALIYAASKGFVSTLTRGMAKELLADKIRVNAVAPGVIMTPFQERFTTPEQLE 206 Query: 72 DIAETIPLARLGRADDIGGACVFLASD-LSLYCTGITLDVNGGMLI 116 +TIP+ R+G D+ GA ++LAS+ +S Y TG +DVNGG + Sbjct: 207 GFRKTIPMGRIGEPDECSGAFLYLASEQMSGYVTGQIIDVNGGQYM 252 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 72.4 bits (176), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 9 SGPRRGGGILGGPHYSAAKAGVLGLARAMAREFGPDGIRVNSIAPGLIGTDIIKGKLTEE 68 SG R G G Y +KA V+GL R MA E GI VNS+APG + T + + +E+ Sbjct: 146 SGIRAGAGRTA---YGTSKAAVIGLTRQMAIELAQYGITVNSVAPGPVDTPMTQAMHSEQ 202 Query: 69 KKADIAETIPLARLGRADDIGGACVFLASDLSLYCTGITLDVNGGML 115 + +P+ R G D+I A +LA++ S Y TG + V+GG + Sbjct: 203 TRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVIPVDGGFV 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 331,956 Number of extensions: 12435 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 28 Length of query: 117 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 43 Effective length of database: 1,269,480 Effective search space: 54587640 Effective search space used: 54587640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)