BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0158.p (81 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 157 2e-40 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 130 2e-32 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 72 8e-15 gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 65 1e-12 gi|300313037|ref|YP_003777129.1| short-chain dehydrogenase [Herb... 62 9e-12 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 157 bits (396), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/81 (93%), Positives = 78/81 (96%) Query: 1 MAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKADIAETIPLARLGRADDIGGACVFLA 60 MAREFGP+GIRVNSI PGLIGTDIIKGKLTEEKKA+IAETIPLARLGRADDIGGACVFL Sbjct: 169 MAREFGPEGIRVNSITPGLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLG 228 Query: 61 SDLSLYCTGITLDVNGGMLIH 81 SDLS YCTGITLDVNGGMLIH Sbjct: 229 SDLSQYCTGITLDVNGGMLIH 249 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 130 bits (327), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 63/81 (77%), Positives = 68/81 (83%) Query: 1 MAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKADIAETIPLARLGRADDIGGACVFLA 60 MAREFGP GIRVN I PGLI TDI K L+ EKKA+IA+TIPL RLG DD+GG CVFLA Sbjct: 169 MAREFGPQGIRVNCITPGLISTDINKDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLA 228 Query: 61 SDLSLYCTGITLDVNGGMLIH 81 SDLS YCTG+TLDVNGGMLIH Sbjct: 229 SDLSQYCTGVTLDVNGGMLIH 249 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 72.0 bits (175), Expect = 8e-15, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 1 MAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKADIAETIPLARLGRADDIGGACVFLA 60 +ARE G I VN +APG I TD+ + L E++ A I + IPL RLG A++I A FLA Sbjct: 172 LAREIGSRNITVNCVAPGFIDTDMTRA-LNEQQSAAILQQIPLGRLGAAEEIAYAVAFLA 230 Query: 61 SDLSLYCTGITLDVNGGMLI 80 S + Y TG TL+VNGGM + Sbjct: 231 SPQAAYITGTTLNVNGGMYM 250 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 65.1 bits (157), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%) Query: 1 MAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKADIAETIPLARLGRADDIGGACVFLA 60 MA+E D IRVN++APG+I T + T E+ +TIP+ R+G D+ GA ++LA Sbjct: 172 MAKELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLA 231 Query: 61 SD-LSLYCTGITLDVNGGMLI 80 S+ +S Y TG +DVNGG + Sbjct: 232 SEQMSGYVTGQIIDVNGGQYM 252 >gi|300313037|ref|YP_003777129.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 369 Score = 62.0 bits (149), Expect = 9e-12, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 49/81 (60%) Query: 1 MAREFGPDGIRVNSIAPGLIGTDIIKGKLTEEKKADIAETIPLARLGRADDIGGACVFLA 60 ++++ GI VN++APG I T +I + E+ A + +PL R G+ D++ A VFLA Sbjct: 288 LSQQLASAGIHVNAVAPGPIWTPLIPASFSAEEVASFGKNVPLGRPGQPDEVAPAYVFLA 347 Query: 61 SDLSLYCTGITLDVNGGMLIH 81 ++ + Y TG L NGG +++ Sbjct: 348 TEGASYMTGQVLHPNGGEIVN 368 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 269,306 Number of extensions: 9370 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 15 Length of query: 81 Length of database: 1,619,870 Length adjustment: 52 Effective length of query: 29 Effective length of database: 1,373,650 Effective search space: 39835850 Effective search space used: 39835850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)