BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0157.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 495 e-141 gi|300309845|ref|YP_003773937.1| LysR family transcription regul... 322 2e-89 gi|300313122|ref|YP_003777214.1| transcription regulator protein... 137 1e-33 gi|300313964|ref|YP_003778056.1| LysR family transcription regul... 123 1e-29 gi|300309577|ref|YP_003773669.1| transcription regulator protein... 122 3e-29 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 495 bits (1275), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/291 (82%), Positives = 264/291 (90%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 MA LPP+PNLQAFEAVARR+SFALAA ELHLTASAVSHQVARLESYLG+RLFERSAHGV Sbjct: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 I+ AGE+YLARIQGAISAITAASMDV+ GVSN+LYIHSAPSIASLWLM RLN FAR+YP+ Sbjct: 61 ITTAGEAYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPE 120 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 I+FNLSAAH+ SNFELGEVDIDIRYGIPNWPGL VEPLFEERIVPLASP FIR+ +L+KP Sbjct: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRLRKP 180 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 DLL V+LIRSNVSVVQW DWF ++ +R P QFAVRFDRAQMSLDAATQGLGVALES T Sbjct: 181 ADLLGVKLIRSNVSVVQWADWFGEFADVRAPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 Query: 241 VAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQA 291 VA RH+ E++LKP+FGLE+ IKVKAHFAVYPA H +RPAV AFL WLREQA Sbjct: 241 VAARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 >gi|300309845|ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 322 bits (826), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 151/289 (52%), Positives = 212/289 (73%) Query: 4 LPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVHISA 63 +PP+ +L AFEA+ARR+SF LAA ELHLT SA+SHQVARLE LG+RLFERS GV ++ Sbjct: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 Query: 64 AGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPDISF 123 AG+SYL R+ GA+ AI +A+ D++HGV NSL IHS+PS ASLWLM R+ F + +PDI+ Sbjct: 62 AGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIAL 121 Query: 124 NLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKPEDL 183 LSA+ S+FE+G+VD+DIR G+P+WP L++E + ER++P+ASP+F+ ++++ P+DL Sbjct: 122 GLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDDL 181 Query: 184 LRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTTVAG 243 + LI+S S++QWP+WFA Y+P P + A+RFDRA MS++AA QGLGV ES Sbjct: 182 VLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFGA 241 Query: 244 RHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAA 292 + +L+PVF +++ H+AV PAR+ RP V FL WLRE++ Sbjct: 242 VALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESG 290 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 137 bits (344), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 146/289 (50%), Gaps = 7/289 (2%) Query: 4 LPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVHISA 63 LPP+ L AFEA AR SFA+AA EL +T SA+SH++ LE ++G RLF R + +S Sbjct: 5 LPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSIGLSE 64 Query: 64 AGESYLARIQGAISAITAASMDVKH-GVSNSLYIHSAPSIASLWLMERLNGFARAYPDIS 122 G YL ++ A+ +T M ++ V + + P+ A LM R+ F + +P+I Sbjct: 65 FGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRHPEIV 124 Query: 123 FNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQ-NKLKKPE 181 L + + L E D++IR+G N+P + E LFEE +ASP +++ +K P Sbjct: 125 VELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPMKSPA 184 Query: 182 DLLRVRLIRSNVSVVQWPDWF--AIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALEST 239 DL + L+RS + W WF A P+ +R D + L+A G GV L Sbjct: 185 DLKQATLLRSALE--PWQPWFEAAGLKDWVEPSA-GLRVDDLGLLLEAVRHGYGVGLTRQ 241 Query: 240 TVAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLR 288 A + ++ +F + A++ VY +RP V+ F+ W++ Sbjct: 242 HFAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWMQ 290 >gi|300313964|ref|YP_003778056.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 145/308 (47%), Gaps = 18/308 (5%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 M LPP+ L+AFEA AR SF AA ELH+T SAVS QV LE++L +LF R + Sbjct: 1 MNKLPPLTALRAFEATARLLSFTAAADELHVTQSAVSRQVRILEAHLEQKLFVRLTRRIE 60 Query: 61 ISAAGESYLARIQGAISAITAASMDVK-HGVSNSLYIHSAPSIASLWLMERLNGFARAYP 119 ++ AG +Y +I+ A I AA + ++L I P +ASLWL+ RL F R Sbjct: 61 LTRAGAAYFQQIRQAFERICAAGEQLHARRQRHTLTIGVLPGLASLWLVPRLELFWRENK 120 Query: 120 DISFNLSAAHTPSNFELGEVDIDIRYG-IP---------------NWPGLQVEPLFEERI 163 +I + A ++F +D+ I+ G +P +W L+ + LF + + Sbjct: 121 EIDVRIVVATGAADFGRTTMDMSIQVGNLPGTTSQGLPLKKRMAVDWHDLRADLLFPDAL 180 Query: 164 VPLASPEFIRQNKLKKPEDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQM 223 V L P RQ+ ++ DL + RLI + + W W + Q + + + Sbjct: 181 VALCHPRLWRQHPVRSVADLSQHRLIHTAIRPDAWAHWLQQHGSRLGARQAGMECSQYPV 240 Query: 224 SLDAATQGLGVALESTTVAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAF 283 +L AA G G+AL + +A + +L+ +FG ++ + P AV F Sbjct: 241 ALQAAMNGEGIALVPSVLAESFDPQHRLRRLFG-GPTPSAGQYYLLTPGDRYDDSAVRRF 299 Query: 284 LGWLREQA 291 WL QA Sbjct: 300 RQWLLMQA 307 >gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 143/303 (47%), Gaps = 29/303 (9%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 ++ LPP+P+L AFEA R SF AA ELHLT SA+S Q+A+LE +LG +LF R + Sbjct: 3 ISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALR 62 Query: 61 ISAAGESYLARIQGAISAITAASMDV-KHGVSNSLYIHSAPSIASLWLMERLNGFARAYP 119 ++ +G+ Y A +Q + A+ D+ K L + + +A LWL RL F +P Sbjct: 63 LTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRARHP 122 Query: 120 DISFNLSAAHTPSNFELGEVDID-----IRYGIPNWPGLQVEPLFEERIVPLASPEFIRQ 174 D L S +L E D D +R G P GL L++E + P+ SP ++ Sbjct: 123 DCHLRLVV--NDSLAQLSETDFDMGIYFLRDGPP--AGLAARRLYDEEVFPVCSPGYL-D 177 Query: 175 NKLKKPEDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMS------LDAA 228 +L PEDL L+ QW W + P+ VR + +S L A Sbjct: 178 GRLLAPEDLRHQTLLTLEDGQRQWMSWQNWMAHNGMPD---VRIEHQILSNQYPVLLQLA 234 Query: 229 TQGLGVALESTTVAGRHIRERQLKPVFGLEQCIKVKA----HFAVYPARHIKRPAVEAFL 284 +G GV L A RH+ + ++ + C + ++AV+P I+ A AF Sbjct: 235 MEGQGVVL-----AWRHMIDACMEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFR 289 Query: 285 GWL 287 WL Sbjct: 290 SWL 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 906,496 Number of extensions: 36369 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 41 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)