BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0148.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 221 5e-59 gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip... 88 9e-19 gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 73 2e-14 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 221 bits (563), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 117/280 (41%), Positives = 165/280 (58%), Gaps = 2/280 (0%) Query: 1 LLAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDKTPDITDKSGKPLD 60 LL+G+VD ID V +D+ KLK +P + R + + +P ITD +GK LD Sbjct: 233 LLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHQGPSPFITDNNGKQLD 292 Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEGAK 120 KNPL D+RVR+A+S AINR+AL +R L+G T A+ + GY +K +D AK Sbjct: 293 KNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAK 352 Query: 121 KLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKARN 180 KLLA AG+P+GF LT+H PN+RY +Q VAQF +RIGI+T+VE P + Y +A Sbjct: 353 KLLADAGFPDGFKLTIHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWAAYSSRANK 412 Query: 181 GDFSVALLGWGTLAGD--FGLRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGSVDE 238 +F+V++L WG G+ + L ++G+ D G G+ NW YS+P VDK + S D Sbjct: 413 NEFAVSVLAWGNGTGEASYALVNVLGSVDPKKGIGASNWNHYSSPAVDKALADSTAEFDA 472 Query: 239 KQRQEFAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTP 278 +R+ + AA + VIPL+H WA +KGLK TP Sbjct: 473 AKREAILRGAAKTVSEEVGVIPLYHYQNIWAAKKGLKVTP 512 >gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 87.8 bits (216), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 31/288 (10%) Query: 1 LLAGEVDAIDSVPPADVPKLKTNPKFSLVQRTSWRTIFWTLDQSRDKTPDITDKSGKPLD 60 L+ G +D I VPP LKTNPK ++ + R F TLD + P+ Sbjct: 242 LMTGAIDWIWRVPPDQADSLKTNPKLAVQSGETMRIGFITLDTTGTSAPN---------- 291 Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVE-KYDPEGA 119 +P KD+RVRQA++ AINR+ + + G P G N ++ Y+P A Sbjct: 292 -SPFKDVRVRQAVNHAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYDYNPAKA 350 Query: 120 KKLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKAR 179 K+LLAAAGYPNGF ++ R + + + L ++GI+ ++ + + R Sbjct: 351 KELLAAAGYPNGFDTDIYAYRER-----EIAEAIIGDLRKVGIRARLHYMKFAALQTEYR 405 Query: 180 NGDFSVALLGWGTLAGD----FGLRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSSLGS 235 +G ++ WG+ + + F G D T +PQ+ + +Q++ S Sbjct: 406 SGKTPMSFYSWGSFSMNDTSAFAGVYFKGGADDIT----------KDPQLQQYLQTADTS 455 Query: 236 VDEKQRQEFAKQAATVALNDYAVIPLHHQYATWAVRKGLKYTPRIDEF 283 +D R+ +A + V P+ +A L + DE Sbjct: 456 IDPAVRKANYSKAQELISKQAYVAPMFSYSTYYAYNAQLNFQGYPDEL 503 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 61 KNPLKDIRVRQAISKAINRQALTERTLEGLGTPASNIVAPGILGYADNLKVEKYDPEGAK 120 + P + +VR+AI+ AIN+QAL + G P +V G+ YA YD + AK Sbjct: 286 QKPFDNPKVREAINYAINKQALVKVAFNGYAVPMDGVVPQGV-DYAYKTGPWPYDVKKAK 344 Query: 121 KLLAAAGYPNGFALTLHGPNNRYINDERVVQTVAQFLSRIGIQTKVETFPLSVYFGKARN 180 LLA AGYPNGF L + ++VQ + Q L+++GI+ K++ + + Sbjct: 345 ALLAEAGYPNGFETELWSAYT-HSTAVKIVQFLQQQLAQVGIKAKIQALEAGQRVERVES 403 Query: 181 ------GDFSVALLGWGTLAG--DFGLRTLVGTTDASTGWGSWNWGKYSNPQVDKLVQSS 232 + +GW + G D+ LR L+ + S +N Y N +VD + + Sbjct: 404 WQDPATAPVRLLYIGWSSSTGEADWALRPLLASE--SFPPRLYNTAYYKNDKVDADIAKA 461 Query: 233 LGSVDEKQRQEFAKQA 248 L + K ++ K A Sbjct: 462 LTLTERKDKEALYKDA 477 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 960,350 Number of extensions: 40614 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 3 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)