BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0136.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrog...   123   4e-30
gi|300310293|ref|YP_003774385.1| NAD-dependent aldehyde dehydrog...    83   6e-18
gi|300311221|ref|YP_003775313.1| NAD+ dependent acetaldehyde deh...    82   1e-17
gi|300313241|ref|YP_003777333.1| NAD-dependent aldehyde dehydrog...    82   1e-17
gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde ...    73   8e-15

>gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  123 bits (308), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 78/112 (69%)

Query: 1   VRKFISEAVESGVPLLAEGAFGKDLPADGYFVKPAFFGRVPRDHRLACKEVFGPVLSAIP 60
           V  F+S+A   G+ L A+G     +P  G++  PA    VP  HRLA +EVFGPVL+A+P
Sbjct: 330 VAGFLSDAQRDGIALAAQGKIAAGVPTGGFYQAPALLRDVPPRHRLAQEEVFGPVLAAMP 389

Query: 61  FKDEEDAIELANATEFGLAAGIWTENGGRQARVSQRVLSGQVFINCYGAGGG 112
           F+DE  AI LAN T++GL A +WT +GGRQ R+++ + SGQVFIN YGAGGG
Sbjct: 390 FEDEAHAIALANGTDYGLVASVWTRDGGRQMRLARAIRSGQVFINNYGAGGG 441


>gi|300310293|ref|YP_003774385.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 504

 Score = 82.8 bits (203), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 1   VRKFISEAVESGVPLLA-EGAFGKDLPADGYFVKPAFFGRVPRDHRLACKEVFGPVLSAI 59
           +++ ++  +E+G  L A    +G++    GYFV+P           +A  E+FGPV  AI
Sbjct: 350 IQRMVARGLEAGATLAAGHTRYGEE----GYFVRPTLLAHASNAMEVARSEIFGPVAVAI 405

Query: 60  PFKDEEDAIELANATEFGLAAGIWTENGGRQARVSQRVLSGQVFINCY 107
           PF+DEE+AI +AN +EFGLA  +WT +  R  RV+  V +G  ++N Y
Sbjct: 406 PFEDEEEAIAIANDSEFGLAGAVWTRDVARAHRVAASVNAGTFWVNSY 453


>gi|300311221|ref|YP_003775313.1| NAD+ dependent acetaldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 5/110 (4%)

Query: 1   VRKFISEAVESGVPLLAEGA---FGKDLPADGYFVKPAFFGRVPRDHRLACKEVFGPVLS 57
           +  +I    + G  +LA G     G DL A GY+VKP  F +     R+  +E+FGPV+S
Sbjct: 352 ILSYIDIGKQEGAKVLAGGGREELGGDL-ASGYYVKPTVF-QGNNKMRIFQEEIFGPVVS 409

Query: 58  AIPFKDEEDAIELANATEFGLAAGIWTENGGRQARVSQRVLSGQVFINCY 107
              FKDEE+A+ +AN T +GL AG+WT +G R  R+ + + +G+V+ NCY
Sbjct: 410 VTTFKDEEEALAIANDTLYGLGAGLWTRDGTRAFRMGREIQAGRVWTNCY 459


>gi|300313241|ref|YP_003777333.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score = 82.0 bits (201), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 3/107 (2%)

Query: 1   VRKFISEAVESGVPLLAEGAFGKDLPADGYFVKPAFFGRVPRDHRLACKEVFGPVLSAIP 60
           V ++I + ++ G  LLA G      P  G+FV+P  F        +A +E+FGPV + I 
Sbjct: 340 VNRYIQQGLDEGATLLAGGV---SRPDKGWFVQPTIFADANNGMSIAREEIFGPVGTIIS 396

Query: 61  FKDEEDAIELANATEFGLAAGIWTENGGRQARVSQRVLSGQVFINCY 107
           F  EE+AI LAN +++GLAA +WT N  R  RV+  V  G V +NC+
Sbjct: 397 FDTEEEAIALANDSKYGLAATVWTTNLARAHRVAAGVKVGAVGVNCW 443


>gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 72.8 bits (177), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 60/105 (57%)

Query: 1   VRKFISEAVESGVPLLAEGAFGKDLPADGYFVKPAFFGRVPRDHRLACKEVFGPVLSAIP 60
           V++ I   ++ G  LLA G    D  A GY+ +P  F  V  D  +A +E+FGPVL+ +P
Sbjct: 341 VQQMIEAGLQDGARLLAGGPGRPDGLAQGYYARPTIFSEVHTDMVIAQEEIFGPVLAILP 400

Query: 61  FKDEEDAIELANATEFGLAAGIWTENGGRQARVSQRVLSGQVFIN 105
           +   E+AI +AN T +GL A +   +  +   V+ R+ SGQV +N
Sbjct: 401 YDTVEEAIAIANDTVYGLGAHVQGRDKDQVRAVAARIQSGQVHLN 445


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 359,321
Number of extensions: 14338
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 12
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 12
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)